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Report for CCDS42120.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42120.1 Public Homo sapiens 16 CPPED1 24 110 108 CCDS HistoryNCBI Gene:55313Re-query CCDS DB by CCDS ID:42120.1Re-query CCDS DB by GeneID:55313See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42120.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381774.9 ENSP00000371193.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000381774.9Link to Ensembl Protein Viewer:ENSP00000371193.4Re-query CCDS DB by Nucleotide ID:ENST00000381774Re-query CCDS DB by Protein ID:ENSP00000371193
Original member Current member NCBI NM_018340.3 NP_060810.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018340.3Link to Protein Sequence:NP_060810.2Re-query CCDS DB by Nucleotide ID:NM_018340Re-query CCDS DB by Protein ID:NP_060810Link to BLAST:NP_060810.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060810.2 314 Q9BRF8-1 314 100% 0 0

Chromosomal Locations for CCDS 42120.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 12664886 12665115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 12704624 12705049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 12781185 12781403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 12803707 12803776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGTCGGCTGCAGAGGCGGGGGGTGTTTTCCACAGAGCCAGGGGCAGGACCCTGGCCGCGTTTCCCGCAG
AAAAGGAAAGCGAATGGAAAGGCCCATTCTACTTCATCCTGGGCGCAGACCCACAGTTTGGGCTGATCAA
GGCCTGGTCCACTGGGGACTGTGACAATGGCGGTGACGAATGGGAACAGGAGATCCGTCTAACTGAGCAA
GCCGTCCAGGCCATCAACAAGCTGAACCCCAAACCCAAATTCTTCGTTCTGTGCGGCGACCTCATCCACG
CCATGCCAGGGAAGCCGTGGCGGACGGAGCAGACGGAGGACCTGAAGCGAGTGCTTAGGGCAGTGGACAG
GGCCATCCCACTGGTCCTTGTCAGCGGCAACCATGACATTGGCAACACCCCCACGGCCGAGACCGTCGAG
GAGTTCTGCCGGACTTGGGGAGATGACTACTTCAGCTTCTGGGTCGGGGGCGTCCTGTTCCTGGTCCTCA
ACTCCCAGTTCTACGAGAACCCCTCCAAATGCCCCAGCCTGAAGCAGGCTCAGGACCAGTGGCTGGACGA
GCAGCTGAGCATCGCGAGGCAGCGGCACTGCCAGCATGCCATCGTCTTCCAGCACATCCCGCTGTTCCTG
GAGAGCATCGACGAGGACGACGACTACTACTTCAACCTCAGCAAGTCCACTCGGAAGAAGTTGGCAGACA
AGTTCATCCACGCAGGTGTCAAAGTCGTGTTCTCAGGCCACTACCACAGGAATGCCGGGGGTACCTACCA
GAACCTCGACATGGTGGTGTCATCTGCCATTGGATGCCAGCTGGGCAGAGACCCCCACGGGCTCCGAGTC
GTGGTGGTCACCGCCGAGAAAATTGTTCACCGATACTACAGTCTAGATGAGCTGAGTGAGAAAGGAATAG
AAGACGATCTCATGGATTTGATCAAGAAAAAATGA

Translation (314 aa):
MSAAEAGGVFHRARGRTLAAFPAEKESEWKGPFYFILGADPQFGLIKAWSTGDCDNGGDEWEQEIRLTEQ
AVQAINKLNPKPKFFVLCGDLIHAMPGKPWRTEQTEDLKRVLRAVDRAIPLVLVSGNHDIGNTPTAETVE
EFCRTWGDDYFSFWVGGVLFLVLNSQFYENPSKCPSLKQAQDQWLDEQLSIARQRHCQHAIVFQHIPLFL
ESIDEDDDYYFNLSKSTRKKLADKFIHAGVKVVFSGHYHRNAGGTYQNLDMVVSSAIGCQLGRDPHGLRV
VVVTAEKIVHRYYSLDELSEKGIEDDLMDLIKKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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