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    CDX4 caudal type homeobox 4 [ Bos taurus (domestic cattle) ]

    Gene ID: 519648, updated on 4-Oct-2024

    Summary

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    Official Symbol
    CDX4provided by VGNC
    Official Full Name
    caudal type homeobox 4provided by VGNC
    Primary source
    VGNC:VGNC:27159
    See related
    Ensembl:ENSBTAG00000001726
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See CDX4 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) X NC_037357.1 (77453969..77462968, complement)

    Chromosome X - NC_037357.1Genomic Context describing neighboring genes Neighboring gene rho guanine nucleotide exchange factor 7-like Neighboring gene cysteine rich hydrophobic domain 1 Neighboring gene elongation factor 1-alpha 1-like Neighboring gene uncharacterized protein MGC140080

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037357.1 Chromosome X Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in animal organ morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in anterior/posterior axis specification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in embryo development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    homeobox protein CDX-4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037357.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      77453969..77462968 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003588154.2 → XP_003588202.2  homeobox protein CDX-4

      See identical proteins and their annotated locations for XP_003588202.2

      UniProtKB/TrEMBL
      E1BAV6
      Related
      ENSBTAP00000002260.7, ENSBTAT00000002260.7
      Conserved Domains (2) summary
      pfam00046
      Location:178 → 230
      Homeobox; Homeobox domain
      pfam04731
      Location:13 → 163
      Caudal_act; Caudal like protein activation region
    Nucleotide Protein
    Heading Accession and Version

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