Conserved Protein Domain Family
Caudal_act

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pfam04731: Caudal_act (this model, PSSM-Id:282574 is obsolete and has been replaced by 461413)
Caudal like protein activation region
This family consists of the amino termini of proteins belonging to the caudal-related homeobox protein family. This region is thought to mediate transcription activation. The level of activation caused by mouse Cdx2 is affected by phosphorylation at serine 60 via the mitogen-activated protein kinase pathway. Caudal family proteins are involved in the transcriptional regulation of multiple genes expressed in the intestinal epithelium, and are important in differentiation and maintenance of the intestinal epithelial lining. Caudal proteins always have a homeobox DNA binding domain (pfam00046).
Statistics
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PSSM-Id: 282574
Aligned: 29 rows
Threshold Bit Score: 70.9117
Created: 25-Jun-2015
Updated: 5-Aug-2015
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q90X89        13 MYPNP---VRHPG-LNLNPQNY---Vp-APP-QYS------DFPSY---H-H------VP--GInsdPHH-----GQPGG 60  western clawed ...
XP_006631948  13 MYSNS---VRHPS-LNLNPQNF---V--PPPpQYS------DFAGY---H-H------VS--GInndPHH-----GQTTG 60  spotted gar
XP_005993018  13 MYPSS----RHSG-LNLGAQNF---V--NPP-QYP------DYGGY---H-H------VPgvNL---DNP-----PQCSG 57  coelacanth
XP_001369246  13 MYPNP---VRHPG-LNLSPQSYmpsA--PPT-QYS------DFPGY---Q-H------VQ--GInsdPPH-----GQAGG 62  gray short-tail...
NP_001092232  13 MYPNS---VRHPS-LNLNPQNF---Vp-APP-QYP------DFTGY---H-H------VP--GIttnDPH-----HSQTG 60  zebrafish
XP_003764520  13 MYPSS---VRHSGgLNLAPQNF---V--SPP-QYP------DYGGY---HvA------AA--NL---DSA-----QSPGP 58  Tasmanian devil
XP_004175127  13 MYPGP---VRHSGgLNLAAQNF---V--GAP-QYA------DYGGY-----H------VN--LD---GAQ-----SPGPA 56  zebra finch
XP_005949859  14 MYPHQnpvTRHPG-LSLSPQNF---SvpAPP-QYP------DFASYhhhH-H------GI--GN---EQHpaqqaPPAAG 70  Burton's mouthb...
XP_003978301  14 MYPHQnavTRHPG-LSLSPQNF---GvpPPP-QYT------DFAGY---H-HhgisneLH--PA---QQA-----GPGSG 68  torafugu
XP_008253476  13 VYPGP---ARPAS-LGLGPQAY---G--PPG-PPPaapqypDFTGY---S-H------VE--PA---PAA-----ATAWG 62  rabbit
Q90X89        61 TWS---S-YTPS----REDWHPYG----------PG--P---GASS------ANP-AQISF-SPS-DY---------NPV 99  western clawed ...
XP_006631948  61 TWS---PaYAPA----REDWPTYA----------PG--T---GPST------SNP-GQITF-SPP-DY---------NPV 100 spotted gar
XP_005993018  58 SWP---SpYGPP----REEWGAYA----------TG--P---ANIHpl---nTSP-GTISY-SPA-EY---------N-- 98  coelacanth
XP_001369246  63 AWS---SpYPPA----KDDWTSYG----------PG--P---TAPT------ASP-AQIGY-SPA-DF---------GAI 102 gray short-tail...
NP_001092232  61 SWN---PaYPPP----REEWTPYG----------Pgsg-----------vssSST-GQLGF-SPP-EF---------SSV 100 zebrafish
XP_003764520  59 SWP---SpYGAPl---REDWNGYA----------PG--AtatANSVahglngGSPaAAMGYsSPA-DY---------HSH 110 Tasmanian devil
XP_004175127  57 WPA---PyAAPL----RDDWGTYG----------QGapP---AAGAvhglngGSPaAPMAY-SPA-DYhhqhhhphaHHH 114 zebra finch
XP_005949859  71 GWSpayPpPPPA----RDDWSSHP----------YA--P---PAass--vtgAVG-TTLGF-GPT-EF------------ 114 Burton's mouthb...
XP_003978301  69 GWN---PaYPPPppptRDEWSPHHyvaaaaaaaaGG--P---SAqst--mpgAVG-PTLGF-SPP-EF------------ 123 torafugu
XP_008253476  63 Ap------FPAP----KDDWAA---------------------YGPgpaapaASS-AQLAF-GPPpDF---------SSV 100 rabbit
Q90X89       100 QP---------PGP--GL-LPPSLN-------S------S-VSPLSP-SA-QRRNLYEWMRR 133 western clawed frog
XP_006631948 101 QP---------PGP---GiLPSPLN-------S------S-VGQLSPtSS-QRRNPYEWMRR 135 spotted gar
XP_005993018  99 -----------PAQtlGSgVIQTLN-------S------NsVEQISL-NS-QRRNPYDWMKK 134 coelacanth
XP_001369246 103 QA---------PPGagLGlLPSSLS-------T------P-GAPLSP-ST-QRRTPYEWMRR 139 gray short-tailed opossum
NP_001092232 101 QT---------PGl-----LQSSIN-------S------S-VGQLSP-NA-QRRNPYDWMRR 132 zebrafish
XP_003764520 111 HHphhhphhpgTAPscASgLLQTLN-------SgppvatA-AEQLSP-GG-QRRNLCEWMRK 162 Tasmanian devil
XP_004175127 115 AG---------PAPhcSAgVMQPLNaasaaasA------A-PEPLSP-GG-QRRGLCEWMRK 158 zebra finch
XP_005949859 115 -----------PGQppAL-IPASLN-------A------S-AGPLSP-GSpRRRTPYEWIRt 149 Burton's mouthbrooder
XP_003978301 124 -----------PGQppAL-----LN-------A------S-AGQLSP-GSpQRRNAYDWIRR 154 torafugu
XP_008253476 101 PA---------PPGpgPGlLAQPLG-------G------P-GAPSSP-GT-QRRTPYEWMRR 137 rabbit
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