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Sample GSM999349 Query DataSets for GSM999349
Status Public on Sep 07, 2012
Title HudsonAlpha_MethylArray_AG10803_Methyl450K
Sample type genomic
 
Source name AG10803
Organism Homo sapiens
Characteristics lab: HudsonAlpha
lab description: Myers - Hudson Alpha Institute for Biotechnology
datatype: MethylArray
datatype description: DNA Methylation Array
cell: AG10803
cell organism: human
cell description: abdominal skin fibroblasts from apparently heathly 22 year old, "8% of the cells examined showing random chromosome loss, 2% showing random chromosome gain, and 2% showing 69,XYY" -Coriell
cell sex: M
labversion: Methyl450K
treatment: None
treatment description: No special treatment or protocol applies
labversion: Methyl450K
obtainedby: UW
obtainedby description: Stamatoyannopoulous - University of Washington
replicate: 1
Biomaterial provider Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=AG10803
Treatment protocol None
Extracted molecule genomic DNA
Extraction protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethyl450
Label Cy3 or Cy5
Label protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethyl450
 
Hybridization protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethyl450
Scan protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethyl450
Description http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethyl450
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethyl450

Score in the bed files is beta value x 1000
 
Submission date Sep 07, 2012
Last update date Jul 11, 2013
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL13534
Series (1)
GSE40699 CpG Methylation by Methyl 450K Bead Arrays from ENCODE/HAIB

Supplementary file Size Download File type/resource
GSM999349_hg19_wgEncodeHaibMethyl450Ag10803SitesRep1_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM999349_hg19_wgEncodeHaibMethyl450Ag10803SitesRep1_Red.idat.gz 4.2 Mb (ftp)(http) IDAT
Processed data provided as supplementary file
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