|
Status |
Public on Jul 22, 2013 |
Title |
Caucasian American [GM17247] |
Sample type |
genomic |
|
|
Source name |
GM17247
|
Organism |
Homo sapiens |
Characteristics |
cell line: GM17247 gender: Female health state: Healthy donor
|
Biomaterial provider |
Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM17247
|
Extracted molecule |
genomic DNA |
Extraction protocol |
DNA was quantified by Quant-iT PicoGreen dsDNA Reagent (Invitrogen) and the integrity was analyzed in a 1.3% agarose gel.
|
Label |
Cy3, Cy5
|
Label protocol |
Standard Illumina labelling protocol
|
|
|
Hybridization protocol |
Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
|
Scan protocol |
Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
|
Description |
healthy sample
|
Data processing |
The intensities of the images were extracted using GenomeStudio (V2011.2) Methylation module (1.8.5) software. The methylation score of each CpG is represented as a beta value.
|
|
|
Submission date |
Apr 27, 2012 |
Last update date |
Jul 22, 2013 |
Contact name |
Manel Esteller |
Organization name |
IDIBELL
|
Department |
PEBC
|
Lab |
Cancer Epigenetics
|
Street address |
Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
|
City |
L'Hospitalet de Llobregat |
State/province |
Barcelona |
ZIP/Postal code |
08908 |
Country |
Spain |
|
|
Platform ID |
GPL13534 |
Series (1) |
GSE36369 |
DNA methylation contributes to natural human variation |
|