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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jan 24, 2012 |
| Title |
UNC_FaireSeq_GM18507 |
| Sample type |
SRA |
| |
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| Source name |
GM18507
|
| Organism |
Homo sapiens |
| Characteristics |
datatype: FaireSeq
datatype description: FAIRE-seq Open Chromatin
controlid: generic_male
labversion: baseAlignCounts.pl v 1,fseq v 1.84, iff_generic_male,1% ENCODE array platform validation tests,p-value cutoff: 0.1
replicate: 1,2
cell organism: human
cell description: lymphoblastoid, International HapMap Project, Yoruba in Ibadan, Nigera, treatment: Epstein-Barr Virus transformed
cell lineage: mesoderm
cell sex: M
controlid: generic_male
labversion: align_on_cluster_bwa.pl v 1
replicate: 1
replicate description: tier 1
|
| Biomaterial provider |
Coriell
|
| Growth protocol |
GM18507_protocol.pdf
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeOpenChromFaire
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| |
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| Library strategy |
OTHER |
| Library source |
genomic |
| Library selection |
other |
| Instrument model |
Illumina Genome Analyzer |
| |
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| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeOpenChromFaire
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| Submission date |
Jan 20, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL9052 |
| Series (1) |
| GSE35239 |
Open Chromatin by FAIRE from ENCODE/OpenChrom(UNC Chapel Hill) |
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| Relations |
| Reanalyzed by |
GSM1002664 |
| SRA |
SRX117799 |
| BioSample |
SAMN00779033 |
| Named Annotation |
GSM864355_hg19_wgEncodeOpenChromFaireGm18507BaseOverlapSignal.bigWig |
| Named Annotation |
GSM864355_hg19_wgEncodeOpenChromFaireGm18507Sig.bigWig |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM864355_hg19_wgEncodeOpenChromFaireGm18507BaseOverlapSignal.bigWig |
1.6 Gb |
(ftp)(http) |
BIGWIG |
| GSM864355_hg19_wgEncodeOpenChromFaireGm18507Pk.narrowPeak.gz |
2.5 Mb |
(ftp)(http) |
NARROWPEAK |
| GSM864355_hg19_wgEncodeOpenChromFaireGm18507Sig.bigWig |
2.8 Gb |
(ftp)(http) |
BIGWIG |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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