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Sample GSM85805 Query DataSets for GSM85805
Status Public on Feb 28, 2006
Title Vd1 PBS rep2
Sample type RNA
 
Source name expanded peripheral blood Vd1 gd T lymphocytes
Organism Homo sapiens
Characteristics healthy female, age 27
Biomaterial provider donor 2
Treatment protocol PBS, 4hr
Growth protocol 3 week culture with Vd1 mab 0.1mg/mL, pan gd mAb 0.1 mg/mL, and IL-15 10ng/mL
Extracted molecule total RNA
Extraction protocol cells were homogenized in TRIzol reagent, then RNA was extracted using a Quagen Rneasy column with no DNase treatment
Label biotin
Label protocol 1mg of total RNA was labelled using the Affymetrix One-Cycle labelling procedure
 
Hybridization protocol 15mg of labelled RNA was hybridized to the arrays according to standart Affymetrix procedures, then arrays were washed and stained on the Affymetrix GeneChip Fluidics Station 450 using the Midi_euk2v3 protocol
Scan protocol samples were scanned using the Affymetrix GeneChip Scanner 3000
Description expanded Vd1 cells, PBS treated, donor 2
Data processing Affymetrix GCOS
 
Submission date Dec 02, 2005
Last update date Dec 02, 2005
Contact name Ellen Kress
E-mail(s) ekress@montana.edu
Phone 406-994-6384
Organization name Montana State University
Department Veterinary Molecular Biology
Lab Jutila
Street address PO Box 173610
City Bozeman
State/province MT
ZIP/Postal code 59717-3610
Country USA
 
Platform ID GPL571
Series (1)
GSE3720 Distinct gene expression in human Vd1 and Vd2 gd T cells following non-TCR agonist stimulation

Data table header descriptions
ID_REF Affymetrix probe set
VALUE signal intensity
ABS_CALL P for present, M for marginal, A for absent
DETECTION P-VALUE indicates the significance level of the P,A, or M absolute call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 885.1 P 0.000127
AFFX-BioB-M_at 1403.7 P 0.000044
AFFX-BioB-3_at 833.6 P 0.000044
AFFX-BioC-5_at 1959.2 P 0.00007
AFFX-BioC-3_at 1903.1 P 0.000044
AFFX-BioDn-5_at 2371.5 P 0.000044
AFFX-BioDn-3_at 7605.1 P 0.000044
AFFX-CreX-5_at 16968.3 P 0.000052
AFFX-CreX-3_at 25362.6 P 0.000044
AFFX-DapX-5_at 307 P 0.000095
AFFX-DapX-M_at 743.5 P 0.000662
AFFX-DapX-3_at 998.5 P 0.000052
AFFX-LysX-5_at 74.5 P 0.000225
AFFX-LysX-M_at 70 A 0.067678
AFFX-LysX-3_at 144.6 P 0.000146
AFFX-PheX-5_at 78.5 P 0.000662
AFFX-PheX-M_at 95.2 P 0.002556
AFFX-PheX-3_at 88.8 P 0.000195
AFFX-ThrX-5_at 66.8 P 0.00034
AFFX-ThrX-M_at 128.6 P 0.000126

Total number of rows: 22277

Table truncated, full table size 589 Kbytes.




Supplementary data files not provided

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