|
| Status |
Public on Oct 25, 2011 |
| Title |
UT-A_ChipSeq_Monocytes-CD14+_Input |
| Sample type |
SRA |
| |
|
| Source name |
Monocytes-CD14+
|
| Organism |
Homo sapiens |
| Characteristics |
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: Monocytes-CD14+_RO01746
cell description: Monocytes-CD14+ are CD14-positive cells from human leukapheresis production, from donor RO 01746 (draw 1 ID is RO 01746, draw 2 ID is RO 01826), Monocytes-CD14+_RO01746 and Monocytes-CD14+_RO01826 are being used as replicates, newly promoted to tier 2: not in 2011 analysis
treatment: None
treatment description: No special treatment or protocol applies
controlid: wgEncodeEH001137
labversion: fseq v 1.84
cell lineage: mesoderm
cell sex: F
antibody: Input
antibody description: Control signal which may be subtracted from experimental raw signal before peaks are called.
controlid: Monocytes-CD14+/Input
labversion: align_on_cluster_bwa.pl v 1
|
| Biomaterial provider |
S. Heimfeld Laboratory, FHCRC
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeOpenChromChip
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina Genome Analyzer |
| |
|
| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeOpenChromChip
|
| |
|
| Submission date |
Oct 25, 2011 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL9052 |
| Series (1) |
| GSE33213 |
Open Chromatin TFBS by ChIP-seq from ENCODE/Open Chrom(UT Austin) |
|
| Relations |
| SRA |
SRX102995 |
| BioSample |
SAMN00744165 |
| Named Annotation |
GSM822296_hg19_wgEncodeOpenChromChipMonocd14InputSig.bigWig |
