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| Status |
Public on Sep 29, 2011 |
| Title |
HudsonAlpha_ChipSeq_GM12891_YY1_(SC-281)_v041610.1 |
| Sample type |
SRA |
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| Source name |
GM12891
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| Organism |
Homo sapiens |
| Characteristics |
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell description: B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1463, treatment: Epstein-Barr Virus transformed
antibody antibodydescription: Rabbit polyclonal IgG, epitope mapping at the C-terminus of YY1 of human origin. Antibody Target: YY1
antibody targetdescription: YY1 is a ubiquitously distributed transcription factor belonging to the GLI-Kruppel class of zinc finger proteins. The protein is involved in repressing and activating a diverse number of promoters. YY1 may direct histone deacetylases and histone acetyltransferases to a promoter in order to activate or repress the promoter, thus implicating histone modification in the function of YY1
antibody vendorname: Santa Cruz Biotechnology
antibody vendorid: sc-281
controlid: SL1782
labexpid: SL2388,SL2130
replicate: 1,2
softwareversion: MACS
antibody antibodydescription: Rabbit polyclonal IgG, epitope mapping at the C-terminus of YY1 of human origin
antibody targetdescription: YY1 is a ubiquitously distributed transcription factor belonging to the GLI-Kruppel class of zinc finger proteins. The protein is involved in repressing and activating a diverse number of promoters. YY1 may direct histone deacetylases and histone acetyltransferases to a promoter in order to activate or repress the promoter, thus implicating histone modification in the function of YY1
antibody vendorname: Santa Cruz Biotech
antibody vendorid: sc-281
treatment: None
treatment description: No special treatment or protocol applies
protocol: v041610.1
protocol description: 2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)
controlid: SL1782
labexpid: SL2388
replicate: 1
replicate description: tier 1
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| Biomaterial provider |
Coriell
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| Treatment protocol |
None
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| Extracted molecule |
genomic DNA |
| Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
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| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina Genome Analyzer |
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| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
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| Submission date |
Sep 28, 2011 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
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| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
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| Platform ID |
GPL9052 |
| Series (1) |
| GSE32465 |
Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB |
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| Relations |
| SRA |
SRX100580 |
| BioSample |
SAMN00738497 |
| Named Annotation |
GSM803535_hg19_wgEncodeHaibTfbsGm12891Yy1sc281V0416101RawRep1.bigWig |
| Named Annotation |
GSM803535_hg19_wgEncodeHaibTfbsGm12891Yy1sc281V0416101RawRep2.bigWig |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM803535_hg19_wgEncodeHaibTfbsGm12891Yy1sc281V0416101PkRep1.broadPeak.gz |
108.6 Kb |
(ftp)(http) |
BROADPEAK |
| GSM803535_hg19_wgEncodeHaibTfbsGm12891Yy1sc281V0416101PkRep2.broadPeak.gz |
350.4 Kb |
(ftp)(http) |
BROADPEAK |
| GSM803535_hg19_wgEncodeHaibTfbsGm12891Yy1sc281V0416101RawRep1.bigWig |
8.9 Mb |
(ftp)(http) |
BIGWIG |
| GSM803535_hg19_wgEncodeHaibTfbsGm12891Yy1sc281V0416101RawRep2.bigWig |
21.2 Mb |
(ftp)(http) |
BIGWIG |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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