NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM78614 Query DataSets for GSM78614
Status Public on Nov 17, 2005
Title NA18857 (Cy3) versus NA10851 (Cy5)
Sample type genomic
 
Channel 1
Source name B-lymphocyte cell line, normal/untreated growth
Organism Homo sapiens
Characteristics hapmap sample id: NA18857, Gender: Male, Cell type: B-lymphocytes, Tissue: Blood, Panel: Yoruban
coriell cell line repository identifier: GM18857
http: //locus.umdnj.edu/nigms/nigms_cgi/display.cgi?GM18857
Biomaterial provider Coriell Cell Repositories
Coriell
Extracted molecule genomic DNA
Label Cy3
Label protocol See Seltzer et al (2005) Genes, Chromosomes & Cancer 44:305-319
 
Channel 2
Source name B-lymphocyte cell line, normal/untreated growth
Organism Homo sapiens
Characteristics HapMap sample id: NA10851, Gender: Male, Cell type: B-lymphocytes, Tissue: Blood, Panel: CEPH
Coriell cell line repository identifier: GM10851
http://locus.umdnj.edu/nigms/nigms_cgi/display.cgi?GM10851
Biomaterial provider Coriell Cell Repositories
Coriell
Extracted molecule genomic DNA
Label Cy5
Label protocol See Seltzer et al (2005) Genes, Chromosomes & Cancer 44:305-319
 
 
Hybridization protocol See Seltzer et al (2005) Genes, Chromosomes & Cancer 44:305-319
Scan protocol See Seltzer et al (2005) Genes, Chromosomes & Cancer 44:305-319
Description B-lymphocytes derived from blood
Data processing Non-normalised signal intensity values derived from NimbleScan v2 software.
 
Submission date Oct 19, 2005
Last update date Jan 15, 2013
Contact name Dan Andrews
E-mail(s) dta@sanger.ac.uk
Organization name Sanger Institute
Street address Wellcome Trust Genome Campus
City Hinxton
ZIP/Postal code CB10 1SA
Country United Kingdom
 
Platform ID GPL2988
Series (1)
GSE3474 HapMap Yoruban individuals vs CEPH reference

Data table header descriptions
ID_REF Feature/probe identifier
EXP_47537_532
REF_47537_635
RATIO Ratio of non-normalised intensity values
EXP_NORM Normalised 'experiment' (non-normalised) intensity value (Ch1)
REF_NORM Normalised reference intensity value (Ch2)
VALUE Normalised log2 ratio

Data table
ID_REF EXP_47537_532 REF_47537_635 RATIO EXP_NORM REF_NORM VALUE
CHR0100P010047579_1 10.854 10.782 0.072 10.897 10.739 0.157
CHR0100P010047587_1 10.948 11.355 -0.407 10.996 11.281 -0.285
CHR0100P010047595_1 11.359 11.485 -0.126 11.427 11.405 0.023
CHR0100P010047603_1 11.239 11.336 -0.097 11.301 11.262 0.039
CHR0100P010047613_1 11.506 11.562 -0.056 11.582 11.478 0.104
CHR0100P010047621_1 10.994 11.023 -0.029 11.045 10.967 0.078
CHR0100P010047629_1 10.996 11.054 -0.058 11.047 10.995 0.052
CHR0100P010047637_1 10.611 10.814 -0.203 10.638 10.769 -0.131
CHR0100P010047645_1 10.314 10.344 -0.030 10.321 10.332 -0.012
CHR0100P010047653_1 10.868 10.779 0.089 10.912 10.737 0.175
CHR0100P010047661_1 10.524 10.509 0.015 10.548 10.485 0.062
CHR0100P010047669_1 10.674 10.984 -0.309 10.706 10.930 -0.225
CHR0100P010047677_1 10.596 10.734 -0.138 10.622 10.695 -0.073
CHR0100P010047685_1 10.019 9.968 0.051 10.002 9.986 0.016
CHR0100P010047693_1 10.721 11.155 -0.435 10.754 11.091 -0.337
CHR0100P010048096_1 11.196 11.285 -0.089 11.256 11.214 0.042
CHR0100P010048104_1 11.148 11.324 -0.176 11.206 11.251 -0.044
CHR0100P010048112_1 11.310 11.604 -0.293 11.375 11.517 -0.142
CHR0100P010048120_1 11.502 11.387 0.115 11.578 11.311 0.267
CHR0100P010048128_1 11.506 11.617 -0.111 11.582 11.529 0.052

Total number of rows: 293851

Table truncated, full table size 17060 Kbytes.




Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap