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Sample GSM78613 Query DataSets for GSM78613
Status Public on Nov 17, 2005
Title NA18854 (Cy3) versus NA10851 (Cy5)
Sample type genomic
 
Channel 1
Source name B-lymphocyte cell line, normal/untreated growth
Organism Homo sapiens
Characteristics hapmap sample id: NA18854, Gender: Male, Cell type: B-lymphocytes, Tissue: Blood, Panel: Yoruban
coriell cell line repository identifier: GM18854
http: //locus.umdnj.edu/nigms/nigms_cgi/display.cgi?GM18854
Biomaterial provider Coriell Cell Repositories
Coriell
Extracted molecule genomic DNA
Label Cy3
Label protocol See Seltzer et al (2005) Genes, Chromosomes & Cancer 44:305-319
 
Channel 2
Source name B-lymphocyte cell line, normal/untreated growth
Organism Homo sapiens
Characteristics HapMap sample id: NA10851, Gender: Male, Cell type: B-lymphocytes, Tissue: Blood, Panel: CEPH
Coriell cell line repository identifier: GM10851
http://locus.umdnj.edu/nigms/nigms_cgi/display.cgi?GM10851
Biomaterial provider Coriell Cell Repositories
Coriell
Extracted molecule genomic DNA
Label Cy5
Label protocol See Seltzer et al (2005) Genes, Chromosomes & Cancer 44:305-319
 
 
Hybridization protocol See Seltzer et al (2005) Genes, Chromosomes & Cancer 44:305-319
Scan protocol See Seltzer et al (2005) Genes, Chromosomes & Cancer 44:305-319
Description B-lymphocytes derived from blood
Data processing Non-normalised signal intensity values derived from NimbleScan v2 software.
 
Submission date Oct 19, 2005
Last update date Jan 15, 2013
Contact name Dan Andrews
E-mail(s) dta@sanger.ac.uk
Organization name Sanger Institute
Street address Wellcome Trust Genome Campus
City Hinxton
ZIP/Postal code CB10 1SA
Country United Kingdom
 
Platform ID GPL2988
Series (1)
GSE3474 HapMap Yoruban individuals vs CEPH reference

Data table header descriptions
ID_REF Feature/probe identifier
EXP_47537_532
REF_47537_635
RATIO Ratio of non-normalised intensity values
EXP_NORM Normalised 'experiment' (non-normalised) intensity value (Ch1)
REF_NORM Normalised reference intensity value (Ch2)
VALUE Normalised log2 ratio

Data table
ID_REF EXP_47537_532 REF_47537_635 RATIO EXP_NORM REF_NORM VALUE
CHR0100P010047579_1 11.072 11.556 -0.484 11.186 11.410 -0.224
CHR0100P010047587_1 11.171 11.401 -0.230 11.292 11.266 0.026
CHR0100P010047595_1 11.224 11.388 -0.164 11.349 11.254 0.095
CHR0100P010047603_1 10.967 11.152 -0.185 11.075 11.036 0.040
CHR0100P010047613_1 11.053 11.617 -0.564 11.166 11.465 -0.299
CHR0100P010047621_1 11.269 11.281 -0.012 11.397 11.154 0.243
CHR0100P010047629_1 10.649 10.542 0.107 10.728 10.479 0.249
CHR0100P010047637_1 10.811 10.848 -0.037 10.906 10.756 0.149
CHR0100P010047645_1 10.292 10.311 -0.019 10.336 10.272 0.064
CHR0100P010047653_1 10.950 11.169 -0.218 11.057 11.051 0.006
CHR0100P010047661_1 10.484 10.614 -0.130 10.548 10.543 0.004
CHR0100P010047669_1 10.862 10.927 -0.065 10.961 10.829 0.132
CHR0100P010047677_1 10.387 10.804 -0.417 10.443 10.716 -0.273
CHR0100P010047685_1 9.964 10.373 -0.409 9.969 10.327 -0.358
CHR0100P010047693_1 10.859 10.990 -0.131 10.958 10.886 0.071
CHR0100P010048096_1 10.854 11.464 -0.610 10.952 11.324 -0.372
CHR0100P010048104_1 11.120 11.234 -0.114 11.239 11.111 0.127
CHR0100P010048112_1 11.912 12.202 -0.291 12.065 12.022 0.044
CHR0100P010048120_1 11.575 12.111 -0.536 11.720 11.934 -0.214
CHR0100P010048128_1 11.360 12.010 -0.650 11.494 11.835 -0.341

Total number of rows: 293851

Table truncated, full table size 17145 Kbytes.




Supplementary data files not provided
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