|
| Status |
Public on Jan 01, 2014 |
| Title |
T5287A1 |
| Sample type |
RNA |
| |
|
| Source name |
frozen colon tissue
|
| Organism |
Homo sapiens |
| Characteristics |
corresponding to gse17536: GSM437115
gender: MALE
t stage: 2
n stage: 0
m stage (0: no; 1: metastasis): 0
histologic grade: WELL DIFF
ajcc staging: Stage 1
adjuvant chemo: N
preoperative chemo: N
overall survival (os): 36.59
os event: alive
disease-free survival time (dfs): 23.96
dfs event: no recurrence
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted using the Qiagen RNeasy kit.
|
| Label |
biotin
|
| Label protocol |
Labeling was done according to the standard Affymetrix protocol
|
| |
|
| Hybridization protocol |
Hybridization was carried out according to the standard Affymetrix protocol
|
| Scan protocol |
According to the Affymetrix standard protocol. (Affymetrix GeneChip Human Genome U133 Plus 2.0 Array)
|
| Description |
frozen colon tissue
|
| Data processing |
Expression values were calculated using the robust multi-array average (RMA) algorithm using R software.
|
| |
|
| Submission date |
May 30, 2011 |
| Last update date |
Jan 01, 2014 |
| Contact name |
Dung-Tsa Chen |
| E-mail(s) |
dung-tsa.chen@moffitt.org
|
| Organization name |
Moffitt Cancer Center
|
| Department |
Biostatistics and Bioinformatics
|
| Street address |
12902 Magnolia Drive
|
| City |
Tampa |
| State/province |
FL |
| ZIP/Postal code |
33647 |
| Country |
USA |
| |
|
| Platform ID |
GPL570 |
| Series (2) |
| GSE29621 |
mRNA and microRNA profile in colon cancer [mRNA data] |
| GSE29623 |
mRNA and microRNA profile in colon cancer |
|
| Relations |
| Reanalysis of |
GSM437115 |
