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Sample GSM28264 Query DataSets for GSM28264
Status Public on Sep 01, 2004
Title Min med -Palmitate: Min med - Glucose ( mAdb expid=47753 )
Sample type RNA
 
Channel 1
Source name Min Med - Palmitate
Organism Mycobacterium tuberculosis H37Rv
Extracted molecule total RNA
 
Channel 2
Source name Min med - Glucose
Organism Mycobacterium tuberculosis H37Rv
Extracted molecule total RNA
 
 
Description H37Rv was grown for 2 days in minimal medium containing 0.05% Tween 80 and 0.05mM Sodium palmitate as sole carbon source. OD650 at start was 0.20 and after 2d was 0.356. RNA was extracted and labeled with Cy5. Cy3 label used similarly grown culture except that C-source was 10mM glucose.
array_print_batch : Mtbb-02
array_print_slide : Mtbb2-35
mAdb_expid : 47753
Sample_label_ch1: Cy5
Sample_label_ch2: Cy3
Sample_value_type: log2 ratio
Sample_series_id: GSE1642
 
Submission date Aug 05, 2004
Last update date May 27, 2005
Contact name Helena I Boshoff
E-mail(s) hboshoff@niaid.nih.gov
Phone 301-451-9438
Fax 301-402-0993
Organization name NIAID/ NIH
Department LIG
Lab Tuberculosis Research Section
Street address 12441 Parklawn Drive
City Rockville
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL1343
Series (1)
GSE1642 Transcriptional Responses of M. tuberculosis to inhibitors of metabolism

Data table header descriptions
ID_REF mAdb wellid
VALUE log2 ratio (loess-normalized to balance channels relative to average log signal strength)
l2f532 spot median log2 signal (Cy3)
l2f635 spot median log2 signal (Cy5)
med_adj_l2ratio l2 ratio using median-based normlization

Data table
ID_REF VALUE l2f532 l2f635 med_adj_l2ratio
1322219_1 3.5849625007 4.9068905956
1322219_2 4.4594316186 5.4594316186
1322219_3 4.2479275134 5.3923174228
1322220_1 3.9068905956 4.9068905956
1322220_2 4.3219280949 5.0874628413
1322220_3 4.0874628413 5.3219280949
1322221_1 0.424 5.1699250014 5.7279204546 1.5184695346
1322221_2 0.473 5.6438561898 6.3037807482 1.2802604078
1322221_3 4.2479275134 5.8073549221
1322222_1 0.081 5.8826430494 5.9541963104 0.9186692896
1322222_2 0.551 5.7548875022 6.2667865407 1.3382364474
1322222_3 0.348 5.7548875022 6.1085244568 1.1783651106
1322223_1 3.5849625007 4.4594316186
1322223_2 4 4.9068905956
1322223_3 3.8073549221 4.9068905956
1322224_1 2 4.5849625007
1322224_2 1 4.8579809951
1322224_3 1 5.0443941194
1322225_1 -0.03 5.2094533656 5.2094533656 1.1957921824
1322225_2 4.5849625007 5

Total number of rows: 4734

Table truncated, full table size 231 Kbytes.




Supplementary data files not provided

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