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Status |
Public on Aug 10, 2017 |
Title |
ms1035_st3_rep3 |
Sample type |
SRA |
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Source name |
Sterile tomato
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Organism |
Solanum lycopersicum |
Characteristics |
tissue: floral bud developmental stage: stage 3 phenotype: male sterile
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Extracted molecule |
total RNA |
Extraction protocol |
Trizol extraction method RNA-seq library (Zhong et al, Cold Spring Harbor Protocols, 940-949, 2011)
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Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina HiSeq 2500 |
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Data processing |
Illumina Hiseq 2500 for base calling Digital expressions with 98% identity threshold using CLC Genomics Workbenchi 6.0 Normalization and transformation of digital expression data using CLC Genomics Workbench 6.0 internal algorithms Genome_build: ITAG2.3_CDS (http://solgenomics.net)
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Submission date |
Aug 08, 2017 |
Last update date |
May 15, 2019 |
Contact name |
Koeun Han |
E-mail(s) |
hke1221@snu.ac.kr
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Organization name |
Seoul National University
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Street address |
Gwanak-ro 1
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City |
Seoul |
ZIP/Postal code |
08826 |
Country |
South Korea |
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Platform ID |
GPL19694 |
Series (1) |
GSE102374 |
RNA transcriptome analysis of floral buds of male-fertile and male-sterile tomato |
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Relations |
BioSample |
SAMN07462291 |
SRA |
SRX3073176 |
Supplementary file |
Size |
Download |
File type/resource |
GSM2735625_S9_ATGTCA_L001_R1_001_paired_RNA-Seq.txt.gz |
543.2 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
Raw data are available in SRA |
Processed data provided as supplementary file |
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