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Status
Public on Aug 12, 2004
Title
GM12873_rep2
Sample type
RNA
Source name
Lymphoblastoid cell line
Organism
Homo sapiens Characteristics
Coriell cell line repository identifier: GM12873http://locus.umdnj.edu/nigms/nigms_cgi/display.cgi?GM12873
Biomaterial provider
Coriell Cell Repositories
Extracted molecule
total RNA
Description
Sample description = RNA was extracted from lymphoblastoid cells of members of the CEPH Utah pedigrees. The cells were grown at a density of 5 x 105 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber. RNA samples were processed and hybridized onto the Affymetrix Human Focus Arrays according to the manufacturer’s suggestion. Arrays were scanned and analyzed using MAS 5.0 software (Affymetrix).
Submission date
Jun 17, 2004
Last update date
Nov 30, 2005
Contact name
Michael Patrick Morley
E-mail(s)
mmorley@pennmedicine.upenn.edu Phone
215-898-2026
Organization name
Perelman School of Medicine at the University of Pennsylvania
Department
Penn Cardiovascular Institute
Street address
3400 Civic Center Blvd, Bldg 421
City
Philadelphia
State/province
PA
ZIP/Postal code
19104
Country
USA
Platform ID
GPL201 Series (3)
GSE1485 Natural variation in human gene expression
GSE2552 Mapping Determinants of Human Gene Expression by Regional and Whole Genome Association
GSE5859 Allelic Differences Account for Gene Expression Differences Among Population.
Data table header descriptions ID_REF
VALUE 'signal' a measure of the abundance of a transcript
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
Data table ID_REF VALUE ABS_CALL 1007_s_at
335.2
P
1053_at
491.4
P
117_at
95.1
P
121_at
865.1
P
1255_g_at
12.4
A
1294_at
374.7
P
1316_at
120.4
P
1320_at
11.6
A
1431_at
33.5
A
1438_at
34.5
A
1487_at
379.8
M
1494_f_at
180.2
M
1598_g_at
214.7
A
160020_at
275.3
P
1729_at
368.6
P
1773_at
160.8
A
177_at
7.3
A
1861_at
111
A
200000_s_at
2207.3
P
200001_at
2272.7
P
8793 156 Kbytes .Supplementary file Size Download File type/resource GSM25683.CEL.gz
1.3 Mb
(ftp) (http) CEL
