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Status
Public on Aug 12, 2004
Title
GM11984_rep1
Sample type
RNA
Source name
Lymphoblastoid cell line
Organism
Homo sapiens
Characteristics
Coriell cell line repository identifier: GM11984http://locus.umdnj.edu/nigms/nigms_cgi/display.cgi?GM11984
Biomaterial provider
Coriell Cell Repositories Coriell
Extracted molecule
total RNA
Description
Sample description = RNA was extracted from lymphoblastoid cells of members of the CEPH Utah pedigrees. The cells were grown at a density of 5 x 105 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber. RNA samples were processed and hybridized onto the Affymetrix Human Focus Arrays according to the manufacturer’s suggestion. Arrays were scanned and analyzed using MAS 5.0 software (Affymetrix).
Submission date
Jun 17, 2004
Last update date
Nov 30, 2005
Contact name
Michael Patrick Morley
E-mail(s)
mmorley@pennmedicine.upenn.edu
Phone
215-898-2026
Organization name
Perelman School of Medicine at the University of Pennsylvania
Department
Penn Cardiovascular Institute
Street address
3400 Civic Center Blvd, Bldg 421
City
Philadelphia
State/province
PA
ZIP/Postal code
19104
Country
USA
Platform ID
GPL201
Series (1)
GSE1485
Natural variation in human gene expression
Data table header descriptions
ID_REF
VALUE
'signal' a measure of the abundance of a transcript
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
Data table
ID_REF
VALUE
ABS_CALL
1007_s_at
296.5
P
1053_at
652
P
117_at
265.3
P
121_at
1102.2
P
1255_g_at
39.2
A
1294_at
365.2
P
1316_at
96.1
P
1320_at
25.3
A
1431_at
39.9
A
1438_at
34.4
A
1487_at
340.3
P
1494_f_at
243.3
P
1598_g_at
267.2
A
160020_at
344.2
P
1729_at
408.1
P
1773_at
168.5
A
177_at
65.1
A
1861_at
117.4
A
200000_s_at
2264.2
P
200001_at
2584.8
P
Total number of rows: 8793 Table truncated, full table size 157 Kbytes .Supplementary file
Size
Download
File type/resource
GSM25518.CEL.gz
1.3 Mb
(ftp) (http)
CEL