|
|
GEO help: Mouse over screen elements for information. |
|
Status |
Public on Nov 04, 2007 |
Title |
WGACON-7 |
Sample type |
RNA |
|
|
Source name |
neuropathologically normal frozen temporal cortex
|
Organism |
Homo sapiens |
Characteristics |
GENDER_male,AGE_79,PMI_1.66,TRANSDET_WHOLE_0.445,TRANSDET_CORTEX_0.765,HYBDATE_3.9.2006,BRAINBANK_A
|
Extracted molecule |
total RNA |
Extraction protocol |
total RNA (Qiagen Rneasy Lipid Tissue cat #cat 74804, Qiagen Rnase free dnase set- cat # 79254)
|
Label |
biotin
|
Label protocol |
RNA: per ambion manual for cat #IL1791, biotinylated cRNA created from in vitro translation targeting poly A tail, cy3 used to image RNA signal
|
|
|
Hybridization protocol |
RNA: per ambion manual for cat #IL1791, biotinylated cRNA created from in vitro translation targeting poly A tail, cy3 used to image RNA signal
|
Scan protocol |
RNA: Illumina Beadstation
|
Description |
Human Cortex from neurologically normal control, Caucasian, male.
|
Data processing |
RNA: Beadstudio software v 1.5.0.34, rank invariant normalization to extract, log10 transformation before analysis
|
|
|
Submission date |
Aug 29, 2007 |
Last update date |
Apr 01, 2009 |
Contact name |
Amanda Myers |
Organization name |
Miller School of Medicine, University of Miami
|
Department |
Psychiatry and Behavioral Sciences
|
Street address |
1600 NW 10th Ave
|
City |
Miami |
State/province |
FL |
ZIP/Postal code |
33136 |
Country |
USA |
|
|
Platform ID |
GPL2700 |
Series (2) |
GSE8919 |
A Survey of Genetic Human Cortical Gene Expression |
GSE15222 |
Genetic control of human brain transcript expression in Alzheimer’s disease. |
|
Data table header descriptions |
ID_REF |
|
VALUE |
Signal |
Detection_Score |
Illumina Detection Score |
Data table |
ID_REF |
VALUE |
Detection_Score |
GI_10047089-S |
-3.6 |
0.34322581 |
GI_10047091-S |
8342.0 |
1.00000000 |
GI_10047093-S |
65.5 |
1.00000000 |
GI_10047099-S |
4.6 |
0.69935484 |
GI_10047103-S |
947.1 |
1.00000000 |
GI_10047105-S |
7.6 |
0.79612903 |
GI_10047121-S |
-0.8 |
0.46709677 |
GI_10047123-S |
22.6 |
0.98967742 |
GI_10047133-A |
209.3 |
1.00000000 |
GI_10047133-I |
13.4 |
0.91741935 |
GI_10092578-S |
-5.5 |
0.26967742 |
GI_10092585-S |
23.4 |
0.99225806 |
GI_10092596-S |
406.1 |
1.00000000 |
GI_10092600-S |
453.9 |
1.00000000 |
GI_10092602-S |
4.7 |
0.70193548 |
GI_10092603-S |
1.6 |
0.57806452 |
GI_10092611-A |
28.6 |
0.99741935 |
GI_10092616-S |
192.1 |
1.00000000 |
GI_10092618-S |
300.5 |
1.00000000 |
GI_10092638-S |
5.2 |
0.71612903 |
Total number of rows: 24354
Table truncated, full table size 713 Kbytes.
Supplementary data files not provided |
Processed data included within Sample table |
|
|
|
|
|