|
Status |
Public on Dec 01, 2014 |
Title |
86 |
Sample type |
RNA |
|
|
Source name |
regional metastases
|
Organism |
Homo sapiens |
Characteristics |
patient id: AS tissue type: breast tumor tissue tissue subtype: lymph node metastasis
|
Biomaterial provider |
Memorial Sloan Kettering Cancer Center (MSKCC)
|
Extracted molecule |
total RNA |
Extraction protocol |
RNeasy Lipid Tissue Mini Kit (Qiagen)
|
Label |
biotin
|
Label protocol |
Expression analysis of tumors was performed using the Affymetrix U133 2.0 microarray (Affymetrix). Processing of the arrays was per the manufacturer’s protocol.
|
|
|
Hybridization protocol |
standard Affymetrix protocol
|
Scan protocol |
standard Affymetrix protocol
|
Data processing |
The raw CEL files of the samples were imported into Partek 6.1 using RMA normalization.
|
|
|
Submission date |
May 27, 2014 |
Last update date |
Dec 01, 2014 |
Contact name |
Marsha Reyngold |
Organization name |
Memorial Sloan-Kettering Cancer Center
|
Department |
Radiation Oncology
|
Lab |
Timothy Chan
|
Street address |
1275 York Ave
|
City |
New York |
State/province |
NY |
ZIP/Postal code |
10065 |
Country |
USA |
|
|
Platform ID |
GPL571 |
Series (2) |
GSE57968 |
Methylome remodeling in regional breast cancer metastasis [expression] |
GSE59000 |
Methylome remodeling in regional breast cancer metastasis |
|