|
| Status |
Public on Dec 01, 2014 |
| Title |
28 |
| Sample type |
RNA |
| |
|
| Source name |
regional metastases
|
| Organism |
Homo sapiens |
| Characteristics |
patient id: O
tissue type: breast tumor tissue
tissue subtype: lymph node metastasis
|
| Biomaterial provider |
Memorial Sloan Kettering Cancer Center (MSKCC)
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNeasy Lipid Tissue Mini Kit (Qiagen)
|
| Label |
biotin
|
| Label protocol |
Expression analysis of tumors was performed using the Affymetrix U133 2.0 microarray (Affymetrix). Processing of the arrays was per the manufacturer’s protocol.
|
| |
|
| Hybridization protocol |
standard Affymetrix protocol
|
| Scan protocol |
standard Affymetrix protocol
|
| Data processing |
The raw CEL files of the samples were imported into Partek 6.1 using RMA normalization.
|
| |
|
| Submission date |
May 27, 2014 |
| Last update date |
Dec 01, 2014 |
| Contact name |
Marsha Reyngold |
| Organization name |
Memorial Sloan-Kettering Cancer Center
|
| Department |
Radiation Oncology
|
| Lab |
Timothy Chan
|
| Street address |
1275 York Ave
|
| City |
New York |
| State/province |
NY |
| ZIP/Postal code |
10065 |
| Country |
USA |
| |
|
| Platform ID |
GPL571 |
| Series (2) |
| GSE57968 |
Methylome remodeling in regional breast cancer metastasis [expression] |
| GSE59000 |
Methylome remodeling in regional breast cancer metastasis |
|
