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Sample GSM136643 Query DataSets for GSM136643
Status Public on Jan 31, 2008
Title 045_08_10
Sample type RNA
 
Source name Pre-treatment metastatic biopsy of CRC
Organism Homo sapiens
Characteristics Tissue: Liver
Extracted molecule total RNA
Extraction protocol RNA isolated from core-needle biopsy stored in RNAlater at RT using RNeasy Mini Kit (Qiagen)according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA RNA!Sample_hyb_protocol = Standard Affymetrix procedures
 
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
Description Gene expression data from pre-cetuximab monotherapy treatment biopsies of advanced metastatic colorectal cancer patients
Data processing Data scaled to 1500 mean signal intensity value using GCOS 1.1.1.052
 
Submission date Sep 15, 2006
Last update date Aug 28, 2007
Contact name Shirin Khambata Ford
E-mail(s) shirin.ford@bms.com
Organization name Bristol-Myers Squibb Pharmaceutical Research Institute
Street address 311 Pennington-Rocky Hill Road, 3B-2.06
City Pennington
State/province NJ
ZIP/Postal code 08534
Country USA
 
Platform ID GPL571
Series (1)
GSE5851 Phase II exploratory pharmacogenomics study of cetuximab monotherapy in patients with advanced metastatic CRC

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1317.3 P 0.000754
AFFX-BioB-M_at 2669.4 P 0.000044
AFFX-BioB-3_at 1531.7 P 0.000052
AFFX-BioC-5_at 3593.7 P 0.000044
AFFX-BioC-3_at 4705.7 P 0.000044
AFFX-BioDn-5_at 9782.4 P 0.000044
AFFX-BioDn-3_at 18251 P 0.000044
AFFX-CreX-5_at 49176.8 P 0.000052
AFFX-CreX-3_at 59757.2 P 0.000044
AFFX-DapX-5_at 9 A 0.659339
AFFX-DapX-M_at 23.8 A 0.645547
AFFX-DapX-3_at 9.7 A 0.83416
AFFX-LysX-5_at 1.5 A 0.98333
AFFX-LysX-M_at 57.7 A 0.5
AFFX-LysX-3_at 24.7 A 0.175307
AFFX-PheX-5_at 6 A 0.737173
AFFX-PheX-M_at 6.9 A 0.927318
AFFX-PheX-3_at 60.7 A 0.368438
AFFX-ThrX-5_at 9.2 A 0.868639
AFFX-ThrX-M_at 15.6 A 0.712257

Total number of rows: 22277

Table truncated, full table size 602 Kbytes.




Supplementary file Size Download File type/resource
GSM136643.CEL.gz 1.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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