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Status
Public on Aug 10, 2006
Title
IMR216ds
Sample type
genomic
Channel 1 Source name
Sample_IMR216
Organism
Homo sapiens Characteristics
Sample_IMR216
Biomaterial provider
Sam Knight, UK
Extracted molecule
genomic DNA
Extraction protocol
Phenol-chloroform extraction
Label
cy5
Label protocol
PMID: 15918152
Channel 2 Source name
GM15724
Organism
Homo sapiens Characteristics
Lymphoblastoid cell line GM15724
Biomaterial provider
Coriell Depositoryhttp://locus.umdnj.edu/nigms/nigms_cgi/display.cgi?GM15724
Growth protocol
Grown as per Coriell recommendations
Extracted molecule
genomic DNA
Extraction protocol
Gentra Puregene DNA Isolation system
Label
cy3
Label protocol
PMID: 15918152
Hybridization protocol
PMID: 15918152
Scan protocol
Slides scanned with ArrayWorX scanner. Image analysis and normalization were performed using UCSF Spot and Sproc software (Jain AN, Tokuyasu TA, Snijders AM, Segraves R, Albertson DG, Pinkel D (2002) Fully automatic quantification of microarray image data. Genome Res 12:325-332)
Description
BACs for which only one of the triplicates printed on the array yielded data, or for which the standard deviation of log2 ratio for the triplicates was >0.2, were removed from final analysis.
Data processing
Default parameters within Spot software
Submission date
Jul 21, 2006
Last update date
Aug 09, 2006
Contact name
Andrew Sharp
E-mail(s)
asharp@u.washington.edu Phone
(+1) 206 616 5117
Fax
(+1) 206 685 7301
Organization name
University of Washington
Department
Genome Sciences
Lab
Eichler Lab, HSB K360
Street address
1705 NE Pacific St
City
Seattle
State/province
WA
ZIP/Postal code
98195
Country
USA
Platform ID
GPL4010 Series (1)
GSE5373 Discovery of previously unidentified genomic disorders from the duplication architecture of the human genome
Data table header descriptions ID_REF VALUE Normalized mean log2 ratio for triplicate spots of that clone on the array
Data table ID_REF VALUE HS7E10
-0.040043
HS5F7
-0.052789
HS2C10
0.075794
HS15C8
0.209726
HS21H10
0.11892
HS13E4
0.198343
HS21D9
0.125403
HS15E4
0.099656
HS11F5
0.361373
HS21E9
0.160907
HS17E12
-0.044999
HS23D3
0.045831
HS7G11
0.015438
HS13B4
0.064781
HS2G2
-0.085373
HS11C11
0.139154
HS2B7
-0.225675
HS12D8
0.013953
HS13C7
-0.085781
HS5B8
-0.558114
2043 31 Kbytes .Supplementary file Size Download File type/resource GSM122423.txt.gz
779.1 Kb
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