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Status
Public on Aug 10, 2006
Title
IMR9
Sample type
genomic
Channel 1 Source name
Sample_IMR9
Organism
Homo sapiens Characteristics
Sample_IMR9
Biomaterial provider
Sam Knight, UK
Extracted molecule
genomic DNA
Extraction protocol
Phenol-chloroform extraction
Label
cy3
Label protocol
PMID: 15918152
Channel 2 Source name
GM15724
Organism
Homo sapiens Characteristics
Lymphoblastoid cell line GM15724
Biomaterial provider
Coriell Depositoryhttp://locus.umdnj.edu/nigms/nigms_cgi/display.cgi?GM15724
Growth protocol
Grown as per Coriell recommendations
Extracted molecule
genomic DNA
Extraction protocol
Gentra Puregene DNA Isolation system
Label
cy5
Label protocol
PMID: 15918152
Hybridization protocol
PMID: 15918152
Scan protocol
Slides scanned with ArrayWorX scanner. Image analysis and normalization were performed using UCSF Spot and Sproc software (Jain AN, Tokuyasu TA, Snijders AM, Segraves R, Albertson DG, Pinkel D (2002) Fully automatic quantification of microarray image data. Genome Res 12:325-332)
Description
BACs for which only one of the triplicates printed on the array yielded data, or for which the standard deviation of log2 ratio for the triplicates was >0.2, were removed from final analysis.
Data processing
Default parameters within Spot software
Submission date
Jul 21, 2006
Last update date
Aug 09, 2006
Contact name
Andrew Sharp
E-mail(s)
asharp@u.washington.edu Phone
(+1) 206 616 5117
Fax
(+1) 206 685 7301
Organization name
University of Washington
Department
Genome Sciences
Lab
Eichler Lab, HSB K360
Street address
1705 NE Pacific St
City
Seattle
State/province
WA
ZIP/Postal code
98195
Country
USA
Platform ID
GPL4010 Series (1)
GSE5373 Discovery of previously unidentified genomic disorders from the duplication architecture of the human genome
Data table header descriptions ID_REF VALUE Normalized mean log2 ratio for triplicate spots of that clone on the array
Data table ID_REF VALUE HS7E10
0.134496
HS5F7
0.131386
HS2C10
HS15C8
0.076422
HS21H10
0.192232
HS13E4
0.071872
HS21D9
0.026147
HS15E4
-0.042661
HS11F5
-0.099315
HS21E9
0.185509
HS17E12
0.075155
HS23D3
0.288068
HS7G11
0.158517
HS13B4
0.174606
HS2G2
0.007632
HS11C11
0.088314
HS2B7
0.353091
HS12D8
0.102398
HS13C7
0.024701
HS5B8
0.130303
2043 31 Kbytes .Supplementary file Size Download File type/resource GSM122105.txt.gz
744.0 Kb
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