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| Status |
Public on Jun 09, 2017 |
| Title |
Small RNA-sequencing from apple in phase transition |
| Organism |
Malus domestica |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
|
| Summary |
We performed Illumina sequencing of sRNA libraries prepared from juvenile and reproductive phase buds from the apple trees. A large number of sRNAs exemplified by 33 previously annotated miRNAs and 6 novel members displayed significant differential expression (DE) patterns in juvenile and reproductive stages. The study provides new insight into our understanding of fundamental mechanism of poorly studied phase transitions in apple and other woody plants and important resource for future in-depth research in the apple development.
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| |
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| Overall design |
Juvenile phase buds and Reproductive phase buds
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| |
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| Contributor(s) |
Guo X, Ma Z, Zhang Z, Cheng L, Zhang X, Li T |
| Citation |
Xinwei Guo, Zeyang Ma, Zhonghui Zhang, Lailiang Cheng, Xiuren Zhang, Tianhong Li. Small RNA-Sequencing Links Physiological Changes and RdDM Process to Vegetative-to-Floral Transition in Apple. Front. Plant Sci., 29 May 2017 https://doi.org/10.3389/fpls.2017.00873
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| |
| Submission date |
Apr 13, 2017 |
| Last update date |
May 15, 2019 |
| Contact name |
Xiuren Zhang |
| E-mail(s) |
xiuren.zhang@tamu.edu
|
| Phone |
9794580596
|
| Organization name |
texas a&m university
|
| Department |
biochemistry & biophysics
|
| Street address |
2123 tamu
|
| City |
college station |
| State/province |
Texas |
| ZIP/Postal code |
77843 |
| Country |
USA |
| |
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| Platforms (1) |
| GPL20848 |
Illumina HiSeq 2500 (Malus domestica) |
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| Samples (5)
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| Relations |
| BioProject |
PRJNA382847 |
| SRA |
SRP103918 |
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