|
| Status |
Public on Apr 18, 2017 |
| Title |
mafba is a downstream transcriptional effector of Vegfc signaling essential for embryonic lymphangiogenesis in zebrafish. |
| Organism |
Danio rerio |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
48hpf kdrl:egfp zebrafish brains were dissociated using Liberase and pdgfr beta egfp postive cells FAC sorted into Trizol LS. RNA was extracted and amplified before sequencing. Samples were prepared in triplicate, with 6 brains used per samples.
|
| |
|
| Overall design |
wild type vs mutant
|
| |
|
| Contributor(s) |
Koltowska K, Hogan BM |
| Citation(s) |
26253536 |
| |
| Submission date |
Apr 11, 2017 |
| Last update date |
May 15, 2019 |
| Contact name |
Othmar Korn |
| Organization name |
Australian Institute for Bioengineering and Nanotechnology
|
| Street address |
University of Queensland
|
| City |
St. Lucia |
| State/province |
Queensland |
| ZIP/Postal code |
4067 |
| Country |
Australia |
| |
|
| Platforms (1) |
| GPL20828 |
Illumina NextSeq 500 (Danio rerio) |
|
| Samples (6)
|
| GSM2574368 |
48hpf zebrafish FAC sorted endothelial cell wt 1 |
| GSM2574369 |
48hpf zebrafish FAC sorted endothelial cell wt 2 |
| GSM2574370 |
48hpf zebrafish FAC sorted endothelial cell wt 3 |
| GSM2574371 |
48hpf zebrafish FAC sorted endothelial cell mutant 1 |
| GSM2574372 |
48hpf zebrafish FAC sorted endothelial cell mutant 2 |
| GSM2574373 |
48hpf zebrafish FAC sorted endothelial cell mutant 3 |
|
| Relations |
| BioProject |
PRJNA382558 |
| SRA |
SRP103805 |
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