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Series GSE89170 Query DataSets for GSE89170
Status Public on Nov 10, 2016
Title Dietary Gluten-Induced Gut Dysbiosis is Accompanied by Selective Upregulation of microRNAs with Intestinal Tight Junction and Bacteria-Binding Motifs in Rhesus Macaque Model of Celiac Disease
Platform organism Homo sapiens
Sample organism Macaca mulatta
Experiment type Expression profiling by RT-PCR
Summary The study describes miRNA expression in intact jejunum following feeding of gluten containing monkey chow to gluten sensitive (GS) rhesus macaques. Gluten feeding induced several inflammation associated miRNAs validated and predicted to directly target intestinal tight junction proteins. Upregulation of these microRNAs was accompanied significantly reduced mRNA expression of claudin-1, claudin-3 and occludin and severe gut dysbiosis. These findings suggest that miRNA mediated downregulation of intestinal epithelial tight junction proteins could increase intestinal permeability and facilitate translocation of dysbiotic bacteria into the systemic circulation.
 
Overall design Four age and weight matched gluten sensitive (GS) Indian rhesus macaques were fed gluten containing monkey chow. Five rhesus macaques served as normal healthy controls. Jejunal segments were collected at necropsy from both groups. All animals were necropsied at 60 days post SIV infection. ~100 ng of total RNA was first reverse transcribed and preamplified according to the manufacturer’s recommendation. microRNA expression profiling was performed using TaqMan ®OpenArray® Human microRNA panels. Data analysis was performed using ExpressionSuite® software. Data was normalized to two endogenous controls (RNU44 and RNU48). Delta CT values were calculated by subtracting individual miRNA CT values from an average of both endogenous controls. Comparisons were made between gluten sensitive and normal healthy control macaques. Four age and weight matched gluten sensitive Indian rhesus macaques were fed gluten containing monkey chow. Five rhesus macaques served as normal healthy controls. Jejunal segments were collected at necropsy from both groups. All animals were necropsied at 60 days post SIV infection. ~100 ng of total RNA was first reverse transcribed and preamplified according to the manufacturer’s recommendation. microRNA expression profiling was performed using TaqMan ®OpenArray® Human microRNA panels. Data analysis was performed using ExpressionSuite® software. Data was normalized to two endogenous controls (RNU44 and RNU48). Delta CT values were calculated by subtracting individual miRNA CT values from an average of both endogenous controls. Comparisons were made between gluten sensitive and normal healthy control macaques. Four age and weight matched gluten sensitive Indian rhesus macaques were fed gluten containing monkey chow. Five rhesus macaques served as normal healthy controls. Jejunal segments were collected at necropsy from both groups. All animals were necropsied at 60 days post SIV infection. ~100 ng of total RNA was first reverse transcribed and preamplified according to the manufacturer’s recommendation. microRNA expression profiling was performed using TaqMan ®OpenArray® Human microRNA panels. Data analysis was performed using ExpressionSuite® software. Data was normalized to two endogenous controls (RNU44 and RNU48). Delta CT values were calculated by subtracting individual miRNA CT values from an average of both endogenous controls. Comparisons were made between gluten sensitive and normal healthy control macaques.
 
Contributor(s) Mohan M
Citation(s) 27801835
Submission date Oct 25, 2016
Last update date Mar 26, 2020
Contact name Mahesh Mohan
E-mail(s) mmohan@txbiomed.org
Organization name Southwest National Primate Research Center
Department Host Pathogen Interaction Program
Lab 12/106
Street address 8715 West Military Road
City San Antonio
State/province Texas
ZIP/Postal code 78227
Country USA
 
Platforms (1)
GPL17837 TaqMan OpenArray Human MicroRNA Panel (4461104)
Samples (9)
GSM2359935 DE87 GS
GSM2359936 FB97 GS
GSM2359937 FH45 GS
Relations
BioProject PRJNA350519

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE89170_fold-change.txt.gz 7.3 Kb (ftp)(http) TXT
GSE89170_non-normalized.txt.gz 18.2 Kb (ftp)(http) TXT
Processed data included within Sample table

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