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Series GSE83358 Query DataSets for GSE83358
Status Public on Sep 08, 2017
Title FOXP1-SHQ1 deletion cooperates with PTEN deletion in oncogenesis
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary RNA-seq was carried out on prostate tumors from mice with prostate-conditional PTEN knockout with and without prostate-conditional FOXP1-SHQ1 locus deletion (12 month old PTEN-flox/flox Pb-Cre4 mice and FOXP1-SHQ1-flox/flox PTEN-flox/flox Pb-Cre4 mice )
 
Overall design Frozen prostate tumors from 12 month old PTEN-flox/flox Pb-Cre4 mice (n=3) and FOXP1-SHQ1-flox/flox PTEN-flox/flox Pb-Cre4 mice (n=3) were analyzed by RNA-seq
 
Contributor(s) Hieronymus H, Sawyers C
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NIH grant(s)
Grant ID Grant title Affiliation Name
P30 CA008748 Genomics: Core--Genomics Sloan Kettering Institute for Cancer Research VIALE
R01 CA155169 Understanding Resistance to Next Generation Antiandrogens Sloan Kettering Institute for Cancer Research SAWYERS
R01 CA182503 Defining Response and Resistance to PI3K and AR inhibition in Prostate Cancer Sloan Kettering Institute for Cancer Research Carver
Submission date Jun 14, 2016
Last update date May 15, 2019
Contact name Haley Hieronymus
Organization name Memorial Sloan Kettering Cancer Center
Street address 1275 York Ave.
City New York
State/province New York
ZIP/Postal code 10065
Country USA
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (6)
GSM2200206 PTENhom_B457
GSM2200207 PTENhom_41
GSM2200208 PTENhom_9228
Relations
BioProject PRJNA325669
SRA SRP076557

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE83358_GEOsubmission_DESeq2processed_PC602_Normalized_reps.txt.gz 835.8 Kb (ftp)(http) TXT
GSE83358_GEOsubmission_HTSeq_counts_PC602_Proj_06542.txt.gz 630.0 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Processed data are available on Series record
Raw data are available in SRA

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