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| Status |
Public on Sep 17, 2021 |
| Title |
TRIM33 binding in hematopoietic cell lines and effects of TRIM33 deletion on RNA PolII occupancy during activation of primary macrophages |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
To get insight into lineage-specific TRIM33 functions, TRIM33 ChIP-seq was carried out in non-differentiated erythroid (MEL NI), differentiated erythroid (MEL I), immature myeloid (32D). In addition, we compared the genome-wide profiles of RNA PolII occupancy between wild-type bone marrow-derived macrophages (BMDM) and Trim33-/- BMDM activated with LPS.
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| Overall design |
Chromatin immunoprecipitations of TRIM33 and RNA PolII followed by multiparallel sequencing performed in hematopoietic cell lines and murine bone marrow-derived macrophages (BMDM).
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| Contributor(s) |
Ferri F, Romeo PH |
| Citation missing |
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| |
| Submission date |
Sep 25, 2015 |
| Last update date |
Sep 18, 2021 |
| Contact name |
federica ferri |
| E-mail(s) |
federica.ferri@cea.fr
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| Organization name |
cea
|
| Street address |
18 route du panorama
|
| City |
Fontenay aux roses |
| ZIP/Postal code |
92265 |
| Country |
France |
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| Platforms (2) |
| GPL11002 |
Illumina Genome Analyzer IIx (Mus musculus) |
| GPL13112 |
Illumina HiSeq 2000 (Mus musculus) |
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| Samples (11)
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| Relations |
| BioProject |
PRJNA297043 |
| SRA |
SRP067080 |
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