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Series GSE70309 Query DataSets for GSE70309
Status Public on Jun 27, 2015
Title Potential Mechanism of Action of 3'-Demethoxy-6-O-Demethylisoguaiacin on Methicillin-resistant Staphylococcus aureus
Organism Staphylococcus aureus subsp. aureus MRSA252
Experiment type Expression profiling by array
Summary Methicillin-resistant Staphylococcus aureus is one of the major causative agents associated to infections with a high morbidity and mortality in hospitals worldwide. In previous studies, we reported that lignan 3'-demethoxy-6-O-demethylisoguaiacin isolated and characterized from Larrea tridentata showed the best activity towards methicillin-resistant S. aureus. Understanding of mechanism of action of drugs allows design drugs in a better way. Therefore, we employed microarray to obtain gene expression profile of methicillin-resistant S. aureus after exposure to 3'-demethoxy-6-O-demethylisoguaiacin. The results showed that lignan had an effect on cell membrane affecting proteins of the ATP-binding cassette (ABC) transport system causing bacteria death.
 
Overall design This study consisted of comparison of isolated RNA of MRSA not treated and MRSA treated with lignan 3'-demethoxy-6-O-demethylisoguaiacin. Both RNAs samples were differentially dyed with Cy3 and Cy5 during cDNA synthesis and hybridized on DNA chip. Afterwards, the chip was scanned in a GenePix 4000B scanner. The resulting gene expression profile was analyzed in databases for functional annotations to find a potential mechanism of the lignan in MRSA.
 
Contributor(s) Favela-Hernández JM, Clemente-Soto AF, Balderas-Rentería I, Garza-González E, Camacho-Corona MR
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Submission date Jun 26, 2015
Last update date Jun 27, 2015
Contact name Aldo Francisco Clemente soto
E-mail(s) aldoclemente13@hotmail.com
Phone 8112396162
Organization name UNIVERSIDAD AUTONOMA DE NUEVO LEÓN
Department Farmacia
Lab ingenieria genetica y genomica
Street address Vicente Guerrero
City Monterrey
State/province Nuevo Leon
ZIP/Postal code 64570
Country Mexico
 
Platforms (1)
GPL20315 MYcroarray CAT Staphylococcus aureus subsp. aureus MRSA252 30K 4rep V1
Samples (1)
GSM1723540 Treatment with 3'-demethoxy-6-O-demethylisoguaiacin
Relations
BioProject PRJNA288293

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE70309_RAW.tar 4.4 Mb (http)(custom) TAR (of TXT)
GSE70309_genArise-methodology.pdf.gz 297.9 Kb (ftp)(http) PDF
Processed data included within Sample table

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