|
| Status |
Public on Dec 31, 2014 |
| Title |
De Novo assembly and transcriptome analysis of Atlantic salmon macrophage/dendritic-like TO cells following type I IFN treatment and Salmonid alphavirus subtype-3 infection |
| Organism |
Salmo salar |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
We used RNA-seq to characterize the transcriptomic changes induced by type I IFN treatment and salmon alphavirus subtype 3 (SAV-3) infection in TO-cells, a macrophage/dendritic like cell-line derived from Atlantic salmon (Salmo salar L) head kidney leukocytes.
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| |
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| Overall design |
analysis of a transcriptome of DEGs induced by type I IFN and SAV-3 in TO cells generated by RNA-seq
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| |
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| Contributor(s) |
Xu C, Evensen Ø, Munang’andu HM, Li J |
| Citation(s) |
31121853, 27215196, 25765343 |
| |
| Submission date |
Dec 11, 2014 |
| Last update date |
Aug 16, 2019 |
| Contact name |
Hetron Munang’andu |
| Organization name |
Norwegian University of Life Sciences
|
| Department |
Basic Sciences and Aquatic Medicine
|
| Lab |
Host-pathogen interaction lab
|
| Street address |
Ullevålsveien 72
|
| City |
Oslo |
| State/province |
Oslo |
| ZIP/Postal code |
0454 |
| Country |
Norway |
| |
|
| Platforms (1) |
| GPL19548 |
Illumina HiSeq 2000 (Salmo salar) |
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| Samples (3) |
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| Relations |
| BioProject |
PRJNA270106 |
| SRA |
SRP051079 |
