|
| Status |
Public on Nov 30, 2006 |
| Title |
ENCODE ChIP-chip for Tetra-acetylated Histone H4 on HeLaS3 Cells [unpublished] |
| Project |
Pilot ENCODE
|
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by genome tiling array
|
| Summary |
Tetra-acetylated Histone H4 ChIP-chip performed on HeLaS3 Cells for Nimblegen ENCODE arrays which comprise 50mer oligonucleotides spaces every 38bps (overlapping by 12nts). Goal was to identify Acetylated Histone H4-binding regions. Use of this data requires permission from its producers.
Keywords: ChIP-chip
|
| |
|
| Overall design |
DNA from immunoprecipitated chromatin using acetyl-Histone H4 antibody or normal rabbit IgG was hybridized to a Nimblegen ENCODE tiling array containing overlapping 50nt oligonucleotide probes. Samples are three biological replicates.
|
| Web link |
http://www.ncbi.nlm.nih.gov/projects/geo/info/ENCODE.html
|
| |
|
| Contributor(s) |
Shou C, Zhong G, Rozowsky JS, Gerstein MB, Snyder MP |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| BioProject |
PRJNA63415 |
| |
| Submission date |
Nov 29, 2006 |
| Last update date |
Jun 28, 2012 |
| Contact name |
Guoneng Zhong |
| E-mail(s) |
guoneng.zhong@yale.edu
|
| Organization name |
Yale Med
|
| Street address |
300 George St
|
| City |
New Haven |
| State/province |
CT |
| ZIP/Postal code |
06511 |
| Country |
USA |
| |
|
| Platforms (1) |
|
| Samples (3) |
| GSM147430 |
Tetra-acetylated Histone H4 ChIP-chip on HeLaS3 cells Sample 1 |
| GSM147431 |
Tetra-acetylated Histone H4 ChIP-chip on HeLaS3 cells Sample 2 |
| GSM147432 |
Tetra-acetylated Histone H4 ChIP-chip on HeLaS3 cells Sample 3 |
|
