|
| Status |
Public on Jul 31, 2014 |
| Title |
RepliSeq of HT-1080 cell line |
| Organism |
Homo sapiens |
| Experiment type |
Other
|
| Summary |
Analysis of replication timing by RepliSeq of HT-1080 Human Connective Tissue Fibrosarcoma Cells. HT-1080 subclone +4 cell line as described in “Human gene targeting favors insertions over deletions.” Russell, D.W., and Hirata, R.K. (2008). Hum Gene Ther 19, 907-914.
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| |
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| Overall design |
RepliSeq of HT-1080 cell line was used to determine the impact of DNA replication on targeted adeno-associated virus sites by mapping replication forks, which revealed a consistent preference for recombination at target loci transcribed towards an incoming fork.
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| |
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| Contributor(s) |
Sandstrom RS, David R, Hansen SR |
| Citation(s) |
25282150 |
| |
| Submission date |
Jun 27, 2014 |
| Last update date |
May 15, 2019 |
| Contact name |
John A Stamatoyannopoulos |
| E-mail(s) |
jstam@altius.org
|
| Organization name |
Altius Institute / University of Washington
|
| Department |
Genome Sciences
|
| Lab |
Stamatoyannopoulos
|
| Street address |
2211 Elliott Avenue, 6th Floor
|
| City |
SEATTLE |
| State/province |
WA |
| ZIP/Postal code |
98121 |
| Country |
USA |
| |
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| Platforms (1) |
| GPL11154 |
Illumina HiSeq 2000 (Homo sapiens) |
|
| Samples (6)
|
|
| Relations |
| BioProject |
PRJNA253850 |
| SRA |
SRP043634 |
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