NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE57026 Query DataSets for GSE57026
Status Public on Feb 23, 2015
Title Ex vivo effects of Tenofovir on four vaginal epithelial cell lines
Organism Homo sapiens
Experiment type Expression profiling by array
Summary In MTN-007, a phase 1, randomized, double-blinded rectal microbicide trial, we used systems genomics/proteomics to determine the effect of tenofovir 1% gel, nonoxynol-9 2% gel, placebo gel or no treatment on rectal biopsies taken at baseline, after one application or after seven daily applications (15 subjects/arm). Experiments were repeated using primary vaginal epithelial cells from four healthy women.
 
Overall design 36 Arrays (3 primary vaginal epithelial cell lines from healthy women donors, cultured with or without 50uM or 500 uM Tenofovir for 1,4,7, or 14 days per donor cell line. A no treatment, culture media only control was included for each donor cell line and for each time point.
 
Contributor(s) Hladik F, Ballweber L, McElrath MJ, McGowan I
Citation(s) 25647729
Submission date Apr 23, 2014
Last update date Aug 13, 2018
Contact name Lamar Ballweber Fleming
E-mail(s) lballweb@fhcrc.org
Organization name Fred Hutchinson Cancer Res Ctr
Department VIDD
Lab McElrath
Street address 1100 Fairview Ave N
City Seattle
State/province WA
ZIP/Postal code 98034
Country USA
 
Platforms (1)
GPL10558 Illumina HumanHT-12 V4.0 expression beadchip
Samples (36)
GSM1373270 HVE_DonorC_50uMTNF_D4
GSM1373271 HVE_DonorA_500uMTNF_D1
GSM1373272 HVE_DonorC_500uMTNF_D7
Relations
BioProject PRJNA245232

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE57026_NonNormalized_exvivoTNF.txt.gz 12.8 Mb (ftp)(http) TXT
GSE57026_RAW.tar 26.2 Mb (http)(custom) TAR
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap