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| Status |
Public on Jan 27, 2014 |
| Title |
Genome-wide profiling of H3K4me3 and H3K27me3 enrichment and mRNA levels in young leaves of Arabidopsis thaliana |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
Chromatin and RNA were extracted from young A. thaliana Col-0 rosette leaves. Chromatin immunoprecipitation experiments were performed using commercially available antibodies and analyzed by Illumina sequencing (ChIP-seq). Transcriptome data were generated by RNA-seq.
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| Overall design |
ChIP-seq analysis of H3K4me3 and H3K27me3 enrichment profiles in 2 biological replicates. RNA-seq analysis of mRNA levels in 1 biological replicate.
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| Contributor(s) |
Chica C, Szarzynska B, Roudier F, Colot V |
| Citation |
Claudia Chica, Bogna Szarzynska, Romy Chen-Min-Tao, Evelyne Duvernois-Berthet, Mohamed Kassam, Vincent Colot, Francois Roudier (2013) Profiling spatial enrichment of chromatin marks suggests an additional epigenomic dimension in gene regulation, Frontiers in Life Science, 7:1-2, 80-87 http://dx.doi.org/10.1080/21553769.2013.844734
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| |
| Submission date |
Sep 05, 2013 |
| Last update date |
May 15, 2019 |
| Contact name |
François ROUDIER |
| E-mail(s) |
francois.roudier@ens-lyon.fr
|
| Organization name |
Ecole Normale Supérieure de Lyon
|
| Department |
Biologie
|
| Lab |
RDP
|
| Street address |
46 Allée d'Italie
|
| City |
Lyon |
| ZIP/Postal code |
69364 |
| Country |
France |
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| Platforms (1) |
| GPL11221 |
Illumina Genome Analyzer IIx (Arabidopsis thaliana) |
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| Samples (6)
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| Relations |
| BioProject |
PRJNA218138 |
| SRA |
SRP029606 |
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