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| Status |
Public on Jan 30, 2013 |
| Title |
SW1 mutant vs. Shewanella piezotolerans WP3 wild-type strain |
| Organism |
Shewanella piezotolerans WP3 |
| Experiment type |
Expression profiling by array
|
| Summary |
The prophage and RF DNA of SW1 were removed from WP3 to construct the phage-free strain. The two strains were cultured at 4°C and the transcriptional profiles were compared.
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| Overall design |
WP3ΔSW1 is the test sample and WP3 wild-type is the reference sample. Three independent cultures were used for RNA extraction, and the RNA samples were combined into one sample for microarray. Each microarray slide has 3 spots for a single gene, and as dye-swaps were performed, 6 spots were used to determine the expression level of one gene.
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| Contributor(s) |
Jian H, Wang F |
| Citation(s) |
24038680 |
| Submission date |
Jan 29, 2013 |
| Last update date |
Jun 06, 2016 |
| Contact name |
Huahua Jian |
| E-mail(s) |
jiandy@sjtu.edu.cn
|
| Organization name |
Shanghai Jiao Tong University
|
| Street address |
No.800 Dongchuan Road
|
| City |
Shanghai |
| ZIP/Postal code |
200240 |
| Country |
China |
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| Platforms (1) |
| GPL16568 |
Shewanella piezotolerans WP3 whole genome microarray |
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| Samples (2) |
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| Relations |
| BioProject |
PRJNA187998 |
