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Series GSE215808 Query DataSets for GSE215808
Status Public on Jan 18, 2024
Title Maresin 1 Repletion Improves Muscle Regeneration After Volumetric Muscle Loss
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary The acute traumatic or surgical loss of skeletal muscle, known as volumetric muscle loss (VML), is a devastating type of injury that results in exacerbated and persistent inflammation followed by fibrosis. The mechanisms that mediate the magnitude and duration of the inflammatory response and ensuing fibrosis after VML remain understudied, and as such, the development of regenerative therapies has been limited. To address this need, we profiled how lipid mediators, which are potent regulators of the immune response after injury, varied with VML injuries that heal or result in fibrosis. We observed that non-healing VML injuries displayed increased pro-inflammatory eicosanoids and a lack of pro-resolving lipid mediators. Treatment of VML with a pro-resolving lipid mediator synthesized from docosahexaenoic acid, called Maresin 1, ameliorated fibrosis through reduction of neutrophils and macrophages and enhanced recovery of muscle strength. These results expand our knowledge of the dysregulated immune response that develops after VML and identify a novel immuno-regenerative therapeutic modality in Maresin 1.
 
Overall design Bilateral 2mm biopsy punch defects were administered to the tibialis anterior muscles of young mice, then treated with maresin 1 or vehicle on days 1, 3, and 5 post injury. At 7 days post injury, mice were humanely euthanized, TAs extracted, pooled according to treatment, digested into single cell suspensions, labeled with 10x genomics cell multiplexing oligos (one per treatment), pooled, FACSed to remove debris and dead cells (7-AAD positive), then analyzed by single cell RNA sequencing.

TA muscles from mice were given a VML injury and treated with either Maresin 1 or Vehicle at 1,3,5 dpi. Muscles were collected at 7 dpi and digested into single cell suspensions and processed for single cell sequencing.
 
Contributor(s) Castor-Macias JA, Larouche JA, Wallace EC, Spence BD, Eames A, Yang BA, Davis C, Brooks SV, Maddipati KR, Markworth JF, Aguilar CA
Citation(s) 38131691
Submission date Oct 14, 2022
Last update date Jan 30, 2024
Contact name Carlos Andres Aguilar
E-mail(s) caguilar@umich.edu
Phone 734-764-8557
Organization name University of Michigan
Department Biomedical Engineering
Lab 2100 Gerstacker Bldg
Street address 2200 Bonisteel Blvd
City Ann Arbor
State/province MI
ZIP/Postal code 48109
Country USA
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (4)
GSM6641558 SkM, Vehicle & Maresin, GEX
GSM6641559 CMO Labels
GSM8043019 VML+Vehicle
Relations
BioProject PRJNA890648

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE215808_RAW.tar 71.0 Mb (http)(custom) TAR (of H5)
GSE215808_config.csv.gz 309 b (ftp)(http) CSV
GSE215808_sample_302_filtered_feature_bc_matrix.h5 4.0 Mb (ftp)(http) H5
GSE215808_sample_303_filtered_feature_bc_matrix.h5 6.3 Mb (ftp)(http) H5
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Raw data are available in SRA
Processed data are available on Series record

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