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| Status |
Public on Dec 13, 2022 |
| Title |
RNA-seq of endothelial cells from 28 hours post fertilization sf3b1 mutant and sibling zebrafish with Stat3 overexpression |
| Organism |
Danio rerio |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
The purpose of the experiment was to define the gene expression and splicing alterations occurring when wildtype or consitutively active Stat3 are expressed in embryonic zebrafish endothelial cells with low levels of splicing factor 3b subunit 1 (Sf3b1). Results provide insight the interplay of Sf3b1 and Stat3 in hematopoietic development.
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| Overall design |
mRNA profiling of kdrl-positive endothelial cells isolated from 28 hours post fertilization wildtype, sf3b1 mutant and sibling zebrafish with wildtype or constitutively active Stat3 overexpression using the Novogene 6000 platform. A total of 15 samples were sequenced.
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| Contributor(s) |
Bowman TV |
| Citation(s) |
36516770 |
| |
| Submission date |
Jun 13, 2022 |
| Last update date |
Mar 14, 2023 |
| Contact name |
Teresa Bowman |
| E-mail(s) |
teresa.bowman@einsteinmed.edu
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| Organization name |
Albert Einstein College of Medicine
|
| Street address |
1300 Morris Park Ave
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| City |
Bronx |
| State/province |
NY |
| ZIP/Postal code |
10461 |
| Country |
USA |
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| Platforms (1) |
| GPL24995 |
Illumina NovaSeq 6000 (Danio rerio) |
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| Samples (15)
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| This SubSeries is part of SuperSeries: |
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| Relations |
| BioProject |
PRJNA848804 |
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