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Series GSE201116 Query DataSets for GSE201116
Status Public on Sep 29, 2022
Title Inhibition of FOXP3 by Stapled Alpha-Helical Peptides Dampens Regulatory T Cell Function
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Despite continuing advances in the development of novel cellular-, antibody-, and chemotherapeutic-based strategies to enhance immune reactivity, the presence of regulatory T cells (Tregs) remains a complicating factor to their clinical efficacy. To overcome dosing limitations and off-target effects from antibody-based Treg deletional strategies, we investigated the ability of hydrocarbon stapled alpha-helical (SAH) peptides to target FOXP3, the master transcription factor regulator of Treg development, maintenance, and suppressive function. Using the crystal structure of the FOXP3 homodimer as a guide, we developed SAHs in the likeness of a portion of the native FOXP3 antiparallel coiled-coil homodimerization domain (SAH-FOXP3) to block this key FOXP3 protein-protein interaction (PPI) through molecular mimicry. We show that lead SAH-FOXP3s bind FOXP3, are cell permeable, non-toxic to T cells, induce dose-dependent transcript and protein level alterations of FOXP3 target genes, impede Treg function, and lead to Treg gene expression changes in vivo consistent with Foxp3 dysfunction.
 
Overall design Comparative gene expression profiling analysis of RNA-seq data for naïve CD4+ Tcons and CD4+CD25+FOXP3+ Tregs following 2 days of daily treatment with either SAH(229-259)C or vehicle. There are 12 samples total (6 Tcon samples, 6 Treg samples). Within each set of 6 Tcon or Treg samples, there are 2 vehicle-treated controls and 4 SAH-treated controls representing cells from either the lymph nodes or spleen.
 
Contributor(s) LaBelle J
Citation(s) 36227917
Submission date Apr 20, 2022
Last update date Oct 28, 2022
Contact name James LaBelle
E-mail(s) jlabelle@bsd.uchicago.edu
Organization name University of Chicago
Street address 900 East 57th Street, KCBD 5122
City Chicago
State/province IL
ZIP/Postal code 60637
Country USA
 
Platforms (1)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
Samples (12)
GSM6050704 KLM01_Tc_LN_DMSO
GSM6050705 KLM02_Tc_LN_SAH-FOXP3(229-259)C
GSM6050706 KLM03_Tc_LN_SAH-FOXP3(229-259)C
Relations
BioProject PRJNA828456

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE201116_LaBelle_GEO_ProcessedData_Tcon.txt.gz 624.3 Kb (ftp)(http) TXT
GSE201116_LaBelle_GEO_ProcessedData_Treg.txt.gz 547.1 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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