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| Status |
Public on Apr 07, 2010 |
| Title |
A high-resolution transcriptome map of Ectocarpus siliculosus |
| Organism |
Ectocarpus siliculosus |
| Experiment type |
Expression profiling by genome tiling array
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| Summary |
Brown algae (Phaeophyceae) are complex photosynthetic organisms with a very different evolutionary history to green plants, to which they are only distantly related. These seaweeds are the dominant species in rocky coastal ecosystems and they exhibit many interesting adaptations to these, often harsh, environments. The brown algae are also important because they are one of only a very small number of eukaryotic lineages that have evolved complex multicellularity. This work used whole genome tiling array approach to generate a comprehensive transcriptome map of the filamentous seaweed Ectocarpus siliculosus (Dillwyn) Lyngbye, a model organism for the brown algae.
Keywords: high-resolution tiling array, brown algae, ectocarpus
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| Overall design |
The slides were hybridised with two, labelled samples: 1) a mixture of labelled cDNA corresponding to RNA samples from mature sporophytes and gametophytes and from immature sporophytes stressed either in high salt medium or by addition of hydrogen peroxide and 2) genomic DNA as a control.
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| Contributor(s) |
Samanta MP, Scornet D, Cock JM |
| Citation(s) |
20520714 |
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| Submission date |
Jan 15, 2010 |
| Last update date |
Jul 24, 2013 |
| Contact name |
Manoj Samanta |
| E-mail(s) |
manoj.samanta@systemix.org
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| Phone |
408-472-7927
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| Organization name |
Systemix Institute
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| Street address |
2240 Homestead Court #309
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| City |
Los Altos |
| State/province |
CA |
| ZIP/Postal code |
94024 |
| Country |
USA |
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| Platforms (8)
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| GPL9931 |
Ectocarpus siliculosus tiling array ChIP1 |
| GPL9932 |
Ectocarpus siliculosus tiling array ChIP2 |
| GPL9933 |
Ectocarpus siliculosus tiling array ChIP3 |
| GPL9934 |
Ectocarpus siliculosus tiling array ChIP4 |
| GPL9935 |
Ectocarpus siliculosus tiling array ChIP5 |
| GPL9936 |
Ectocarpus siliculosus tiling array ChIP6 |
| GPL9937 |
Ectocarpus siliculosus tiling array ChIP7 |
| GPL9938 |
Ectocarpus siliculosus tiling array ChIP8 |
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| Samples (16)
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| GSM497625 |
Es1, Ectocarpus siliculosus tiling array Chip1 |
| GSM497626 |
Es2, Ectocarpus siliculosus tiling array Chip1 |
| GSM497627 |
Es3, Ectocarpus siliculosus tiling array Chip2 |
| GSM497628 |
Es4, Ectocarpus siliculosus tiling array Chip2 |
| GSM497629 |
Es5, Ectocarpus siliculosus tiling array Chip3 |
| GSM497630 |
Es6, Ectocarpus siliculosus tiling array Chip3 |
| GSM497631 |
Es7, Ectocarpus siliculosus tiling array Chip4 |
| GSM497632 |
Es8, Ectocarpus siliculosus tiling array Chip4 |
| GSM497633 |
Es9, Ectocarpus siliculosus tiling array Chip5 |
| GSM497634 |
Es10, Ectocarpus siliculosus tiling array Chip5 |
| GSM497635 |
Es11, Ectocarpus siliculosus tiling array Chip6 |
| GSM497636 |
Es12, Ectocarpus siliculosus tiling array Chip6 |
| GSM497637 |
Es13, Ectocarpus siliculosus tiling array Chip7 |
| GSM497638 |
Es14, Ectocarpus siliculosus tiling array Chip7 |
| GSM497639 |
Es15, Ectocarpus siliculosus tiling array Chip8 |
| GSM497640 |
Es16, Ectocarpus siliculosus tiling array Chip8 |
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| Relations |
| BioProject |
PRJNA122093 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE19912_RAW.tar |
194.1 Mb |
(http)(custom) |
TAR (of PAIR) |
| Processed data included within Sample table |
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