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Series GSE196651 Query DataSets for GSE196651
Status Public on Feb 16, 2022
Title V. cholerae transcriptome in MH, supplemented or not with glucose 0.4% or maltose 0.4%
Organism Vibrio cholerae O1 biovar El Tor str. N16961
Experiment type Expression profiling by high throughput sequencing
Summary We study gene expression levels of V. cholerae N16961 WT and crp mutant strains/V. cholerae N16961 hapR+ corrected strain, ravAviA mutant and ravAviA overexpressing strains in exponential phase in MH, MH+maltose 0.4% and MH+glucose 0.4%
 
Overall design Bacterial cells were grown to OD 0.3 and RNAseq was performed.
 
Contributor(s) Krin E, Carvalho A, Lang M, Kornobis E, Turc E, Mazel D, Baharoglu Z
Citation(s) 37861314
Submission date Feb 13, 2022
Last update date Feb 15, 2024
Contact name Zeynep Baharoglu
E-mail(s) baharogl@pasteur.fr
Organization name Institut Pasteur
Department Génomes et Génétique
Lab Plasticité du Génome Bactérien
Street address 28 Rue du Docteur Roux
City Paris
ZIP/Postal code 75015
Country France
 
Platforms (1)
GPL30088 Illumina HiSeq 2000 (Vibrio cholerae O1 biovar El Tor str. N16961)
Samples (45)
GSM5897379 V. cholerae glucose 0.4_replicate 1
GSM5897380 V. cholerae glucose 0.4_replicate2
GSM5897381 V. cholerae glucose 0.4_replicate3
Relations
BioProject PRJNA806666

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE196651_B3862-v1.complete.txt.gz 1.6 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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