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Series GSE195501 Query DataSets for GSE195501
Status Public on Jan 29, 2022
Title Whole transcriptome-sequencing of CD1c+ conventional type 2 dendritic cells of human non-infectious uveitis patients [Replication cohort]
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary RNA-sequencing data from flow cytometry-sorted primary HLA-DR+ Lin-(CD19-CD3-CD14-) CD1c+ cDC2s purifed from frozen peripheral blood mononuclear cells from patients with anterior, intermediate, and posterior non-infectious uveitis and healthy controls.
 
Overall design This cohort was used as a replication cohort for GSE194060 (see also: https://www.biorxiv.org/content/10.1101/2021.11.16.468816v1). Nitrogen-stored PBMCs were thawed and subjected to cDC2 purification by flow cytometry and subjected to RNA-sequencing by NextSeq.
 
Contributor(s) Kuiper JJ
Citation(s) 37042831
Submission date Jan 26, 2022
Last update date Aug 08, 2023
Contact name Jonas Kuiper
E-mail(s) J.J.W.Kuiper@umcutrecht.nl
Organization name Universitair Medisch Centrum Utrecht
Department Ophthalmology
Street address Heidelberglaan 100
City Utrecht
ZIP/Postal code 3584 CX
Country Netherlands
 
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (36)
GSM5839487 HLA-B27-positive acute anterior uveitis [SystUviAU010]
GSM5839488 HLA-B27-positive acute anterior uveitis [SystUviAU011]
GSM5839489 HLA-B27-positive acute anterior uveitis [SystUviAU012]
Relations
BioProject PRJNA800817

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE195501_RAW.tar 7.2 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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