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Series GSE193421 Query DataSets for GSE193421
Status Public on Jul 27, 2022
Title Granulocytic myeloid-derived suppressor cells to prevent and treat murine immune-mediated bone marrow failure
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Other
Summary Background and methods: Myeloid-derived suppressor cells (MDSCs) are immature myeloid cells which originate in the bone marrow (BM) and have immunoregulatory functions. MDSCs have been implicated in the pathogenesis of several autoimmune diseases but not in immune aplastic anemia (AA). We examined the roles of granulocytic-MDSCs (G-MDSCs) in murine models of human AA and bone marrow failure (BMF). To perform Totalseq, bone marrow mononuclear cells were FACS sorted to obtain alive cells based on FSC and SSC from five bone marrow failure control mice and five G-MDSC-treated mice, mRNA profiles of single cells were generated and sequenced on an Illumina Novaseq System.
Results: As both prophylaxis and therapy, BM-derived G-MDSCs improved pancytopenia and BM cellularity and decreased BM T cell infiltration in major histocompatibility (MHC)-matched CB10 BMF mice. Single cell RNA sequencing demonstrated that G-MDSCs downregulated cell cycle related pathways in BM infiltrated T cells, consistent with suppression of T cell proliferation by G-MDSCs.
Conclusion: Our results demonstrate that BM-derived G-MDSCs improved pancytopenia and BM cellularity and decreased BM T cell infiltration in major histocompatibility (MHC)-matched CB10 BMF mice, but not in MHC-mismatched CByB6F1 BMF model. Therapeutic efficacy of G-MDSCs are immune context-dependent.
Bone marrow mononuclear cells were FACS sorted to obtain alive cells based on FSC and SSC from five bone marrow failure control mice and five G-MDSC-treated mice.
 
Overall design We characterized transcriptomes in different cell populations based on their surface protein markers and marker genes in the bone marrow mononuclear cells from five C.B10 BM failure control mice and five bone marrow failure mice treated with G-MDSCs, and described gene expression of these cells.
 
Contributor(s) Gao S, Feng X
Citation(s) 35895513
Submission date Jan 10, 2022
Last update date Jul 30, 2022
Contact name Shouguo Gao
E-mail(s) gaos2@nih.gov
Phone 3014029014
Organization name National Institutes of Health
Department NHLBI
Lab Hematology Branch
Street address 9000 Rockville Pike
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (3)
GSM5800043 Bone Marrow Mononuclear Cells, GEX
GSM5800044 Bone Marrow Mononuclear Cells, ADT
GSM5800045 Bone Marrow Mononuclear Cells, VDJ
Relations
BioProject PRJNA796065

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Supplementary file Size Download File type/resource
GSE193421_GEO_upload_seq_HTO.xlsx 12.4 Kb (ftp)(http) XLSX
GSE193421_RAW.tar 93.4 Mb (http)(custom) TAR (of CSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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