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Series GSE178691 Query DataSets for GSE178691
Status Public on Jun 14, 2022
Title Identification of transcription termination defects at DNA hypomethylated transcription termination sites in DNA methyltransferase 3a-deficient vertebrates
Organism Danio rerio
Experiment type Expression profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Citation(s) 36034642
Submission date Jun 22, 2021
Last update date Aug 31, 2022
Contact name Yutaka Kikuchi
E-mail(s) yutaka@hiroshima-u.ac.jp
Phone 0824247440
Organization name Hiroshima University
Street address 1-3-1, Kagamiyama
City Higashi-Hiroshima
State/province Hiroshima
ZIP/Postal code 7398526
Country Japan
 
Platforms (2)
GPL24995 Illumina NovaSeq 6000 (Danio rerio)
GPL30301 HiSeq X Five (Danio rerio)
Samples (4)
GSM5396121 WT_2 dpf_RNAseq
GSM5396122 MZdnmt3aa_2 dpf_RNAseq
GSM5396147 WT_2 dpf_WGBS
This SuperSeries is composed of the following SubSeries:
GSE178688 Identification of transcription termination defects at DNA hypomethylated transcription termination sites in DNA methyltransferase 3a-deficient vertebrates [RNA-Seq]
GSE178690 Identification of transcription termination defects at DNA hypomethylated transcription termination sites in DNA methyltransferase 3a-deficient vertebrates [WGBS]
Relations
BioProject PRJNA740013

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE178691_RAW.tar 416.6 Mb (http)(custom) TAR (of BEDGRAPH, BIGWIG)
SRA Run SelectorHelp

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