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Series GSE161642 Query DataSets for GSE161642
Status Public on Dec 04, 2020
Title Reactive oligodendrocyte progenitor cells (re-)myelinate the regenerating zebrafish spinal cord [Single cell]
Organism Danio rerio
Experiment type Expression profiling by high throughput sequencing
Summary Spinal cord injury (SCI) results in loss of neurons, oligodendrocytes and myelin sheaths, all of which are not efficiently restored. The scarcity of oligodendrocytes in the lesion site impairs remyelination of spared fibres, which leaves axons denuded, impedes signal transduction and contributes to permanent functional deficits. In contrast to mammals, zebrafish can functionally regenerate the spinal cord. Yet, little is known about oligodendroglial lineage biology and remyelination capacity after SCI in a regeneration-permissive context. Here, we report that in adult zebrafish, SCI results in axonal, oligodendrocyte and myelin sheath loss. We find that OPCs, the oligodendorocyte progenitor cells, survive the injury, enter a reactive state, proliferate and differentiate into oligodendrocytes. Concomitantly, the oligodendrocyte population is re-established to pre-injury levels within two weeks.Transcriptional profiling revealed that reactive OPCs upregulate the expression of several myelination-related genes. Interestingly, global reduction of axonal tracts and partial re-myelination, relative to pre-injury levels, persist at later stages of regeneration, yet suffices for functional recovery. Taken together, these findings imply that in the zebrafish spinal cord, OPCs replace lost oligodendrocytes and, thus, re-establish myelination during regeneration.
 
Overall design Single cell transcriptome of reactive olig2:eGFP+ OPCs from the zebrafish spinal cord at 7 days post lesion (dpl) and sham controls.
 
Contributor(s) Tsata V, Kroehne V, Brand M
Citation(s) 33158923
Submission date Nov 17, 2020
Last update date Dec 09, 2020
Contact name Vasiliki Tsata
E-mail(s) vasiliki.tsata@tu-dresden.de
Organization name TU Dresden
Department Center for Molecular and Cellular Bioengineering (CMCB)
Lab Brand
Street address Fetscherstrasse 105
City Dresden
State/province Saxony
ZIP/Postal code 01309
Country Germany
 
Platforms (1)
GPL20828 Illumina NextSeq 500 (Danio rerio)
Samples (67)
GSM4911645 SHAM.1X_01_D02
GSM4911646 SHAM.1X_01_F01
GSM4911647 SHAM.1X_01_E01
This SubSeries is part of SuperSeries:
GSE161687 Reactive oligodendrocyte progenitor cells (re-)myelinate the regenerating zebrafish spinal cord
Relations
BioProject PRJNA678983
SRA SRP292929

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE161642_bfx1011.GRCz10.e87.txt.gz 3.2 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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