|
| Status |
Public on May 11, 2021 |
| Title |
Level of polyadenylated RNAs during regeneration of adult zebrafish brain |
| Organism |
Danio rerio |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
For its remarkable ability to heal injuries of the adult central nervous system, the zebrafish has become an important model to investigate neural regeneration. Despite big progresses in our understanding of some of the underlying key processes, a comprehensive analysis of the changes of the transcriptome has not been reported yet. We analysed here the transcriptome of the regenerating telencephalon for changes in the expression of mRNAs, their splice variants and regulatory long non-coding RNAs and their putative targets.
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| |
|
| Overall design |
RNA sequencing of injured and control adult zebrafish telencephalic hemisphere
|
| |
|
| Contributor(s) |
Gourain V, Armant O, Straehle U |
| Citation(s) |
34054419, 35204047 |
| |
| Submission date |
Nov 09, 2020 |
| Last update date |
Mar 04, 2022 |
| Contact name |
Victor GOURAIN |
| Organization name |
Centre de recherche en transplantation et immunologie
|
| Department |
UMR1064
|
| Street address |
30 Bd Jean Monnet
|
| City |
Nantes |
| ZIP/Postal code |
44093 |
| Country |
France |
| |
|
| Platforms (1) |
| GPL18171 |
Illumina HiSeq 1500 (Danio rerio) |
|
| Samples (6)
|
| GSM4890124 |
healthy telencephalic hemisphere 1 [RNA-seq] |
| GSM4890125 |
healthy telencephalic hemisphere 2 [RNA-seq] |
| GSM4890126 |
healthy telencephalic hemisphere 3 [RNA-seq] |
| GSM4890127 |
injured telencephalic hemisphere 1 [RNA-seq] |
| GSM4890128 |
injured telencephalic hemisphere 2 [RNA-seq] |
| GSM4890129 |
injured telencephalic hemisphere 3 [RNA-seq] |
|
| Relations |
| BioProject |
PRJNA675638 |
| SRA |
SRP291777 |
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