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Series GSE129238 Query DataSets for GSE129238
Status Public on Jun 29, 2019
Title Differential c-Kit expression identifies two subsets of ILC2s with IL-17 producing capabilities that may contribute to IL-17 mediated pathologies
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Group 2 innate lymphoid cells (ILC2s) are linked to type 2 immune diseases but can also molecularly change phenotype and provide type 1 immunity towards pathogens. Here we identify an ILC2 subset which can convert into IL-17 producing NKp44‒ ILC3-like cells. c-Kit and CCR6 define this ILC2 subpopulation which exhibit ILC3 features, including RORγt, which enables the conversion into IL-17 producing cells in response to IL-1β and IL-23. We also report a novel but critical role for TGF-β in promoting the conversion of c-kit‒ ILC2s into RORγt expressing c-Kit+ ILC2s by inducing the upregulation of IL23R, CCR6 and KIT mRNA in these cells. This switch was dependent on RORγt and down-regulation of GATA-3. IL-4 was able to reverse this event supporting a role for this cytokine in maintaining ILC2 identity. Notably, this plasticity has physiological relevance as a subset of RORγt+ ILC2s express the skin homing receptor CCR10 and the frequencies of IL-17‒producing ILC3s are increased at the expense of ILC2s within the lesional skin of psoriatic patients compared to healthy individuals.
 
Overall design c-kit‒ and c-Kit+ ILC2 subsets purified from PBMC by flow cytometry were stimulated with different combinations of IL-1β, IL-23 and TGF-β to induce IL-17A production
 
Contributor(s) Bernink JH, Teunissen MB, Volckmann R, Koster J, Spits H
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Submission date Apr 02, 2019
Last update date Jul 01, 2019
Contact name Richard Volckmann
E-mail(s) r.volckmann@amsterdamumc.nl
Organization name Academic Medical Centre, University of Amsterdam
Department Department of Oncogenomics
Street address P.O. Box 22700
City Amsterdam
ZIP/Postal code 1100DE
Country Netherlands
 
Platforms (1)
GPL24324 [Clariom_S_Human_HT] Affymetrix Clariom S Assay HT, Human (Includes Pico Assay)
Samples (18)
GSM3703318 01 cKit-pos_IL-1B
GSM3703319 03 cKit-pos_IL-1B IL-23
GSM3703320 04 cKit-pos_IL-1B IL-23 TGF-B
Relations
BioProject PRJNA530567

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE129238_RAW.tar 20.6 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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