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Series GSE126749 Query DataSets for GSE126749
Status Public on Apr 02, 2019
Title GEF-H1-IRF5 mediated gene expression changes in BMDM by MDP recognition
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary The transcription factor IRF5 is essential for immune defense against pathogens. Here, the authors show that the microtubule-associated factor GEF-H1 plays a critical role in host defense against Listeria monocytogenes in macrophages via activation of the IRF5 kinase IKKe
 
Overall design Examination of MDP stimulated BMDM from WT, Arhgef2 and Irf5 KO mice
 
Contributor(s) Reinecker H
Citation(s) 30902986
Submission date Feb 19, 2019
Last update date Apr 02, 2019
Contact name Hans-Christian Reinecker
E-mail(s) Hans-Christian.Reinecker@UTSouthwestern.edu
Phone 6173311574
Organization name University of Texas Southwestern Medical Center
Department Medicine
Lab Reinecker Lab
Street address J5.136, 5959 Harry Hines Boulevard
City Dallas
State/province Texas
ZIP/Postal code 75235-6472
Country USA
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (12)
GSM3612106 WT NT rep1
GSM3612107 WT NT rep2
GSM3612108 WT MDP rep1
Relations
BioProject PRJNA523187
SRA SRP186268

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE126749_gene_exp.diff.gz 11.3 Mb (ftp)(http) DIFF
GSE126749_genes.fpkm_tracking.txt.gz 1.6 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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