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Series GSE114631 Query DataSets for GSE114631
Status Public on Jan 10, 2019
Title Tumor-resident memory-like CD8 T cells represent an essential cellular target for cancer immunotherapy
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Persistent exposure to high levels of antigen results in the progressive exhaustion of T cells and has been thought to preclude the formation of memory. In contrast to the latter assumption, we show here that tumor-specific CD8 T cells residing in the tumor microenvironment include a Tcf1 expressing sub population that has key characteristics of central memory cells, lack an effector cell signature but display hallmarks of exhausted T cells, including the expression co-inhibitory receptors such as PD1. Similar memory-like cells are identified in melanoma patients. Preclinical mouse models reveal that the expansion of tumor-specific CD8 T cells, the production of terminally differentiated exhausted CD8 T cells and sustained tumor control in response to therapeutic vaccination or immune checkpoint blockade critically depends on the presence of these memory-like CD8 T cells. Tumor immune responses thus harbor tumor resident memory-like CD8 T cell populations, which can be therapeutically targeted to improve immune control of cancer.
 
Overall design Naive Tcf7-GFP+ P14 cells (CD45.2) (Naive) were transferred into B6 recipient mice (CD45.1) one day prior to sub-cutaneous implantation of B16-gp33 tumor cells. When tumors became palpable mice were vaccinated with pg33 peptide plus poly(I:C). Six days later Tcf7-GFP+ P14 cells and Tcf7-GFP- P14 cells amongst tumor infiltrating lymphocytes (TIL) were flow sorted. Total RNA was extracted, cDNA libraries prepared and sequencing was performed using Illumina HiSeq 2500 technology.
 
Contributor(s) Siddiqui I, Calderon-Copete S, Pradervand S, Held W
Citation(s) 30635237
Submission date May 18, 2018
Last update date Jul 30, 2019
Contact name Sandra Calderon
Organization name University of Lausanne
Department Center for Integrative Genomics
Lab Lausanne Genomics Technologies Facility
Street address GĂ©nopode Building
City Lausanne
ZIP/Postal code 1015
Country Switzerland
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (11)
GSM3146190 Naive P14 cells_Spleen_Donor1
GSM3146191 Tcf7-GFP+ P14 cells_tumor_Donor1
GSM3146192 Tcf7-GFP- P14 cells_tumor_Donor1
Relations
BioProject PRJNA472005
SRA SRP148417

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE114631_RAW.tar 1.8 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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