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Platform GPL15677 Query DataSets for GPL15677
Status Public on Jun 13, 2012
Title Combimatrix C. botulinum A ATCC 3502 3.5K
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Clostridium botulinum A str. ATCC 3502
Manufacturer University of Verona - Scientific and Technological Department - Plant Functional Genomics Centre
Manufacture protocol Probes are directly synthesized on a 12k Combimatrix array by an in situ oligo synthesis system developed by Combimatrix Corporation (Mukilteo, USA) using the Combimatrix CustomArray synthesizer. Standard synthesis protocol provided by Combimatrix was used.
Support silicon
Coating unknown
 
Description Spots size: 25 microns
Total number of spots: 94928
Number of spots replicates per oligo: 3 Probes corresponding to 3400 genomic CDSs of C. botulinum A ATCC 3502 were synthesized in three replicates randomly distributed on the chip.
 
Web link http://ddlab.sci.univr.it/FunctionalGenomics/
Contributor(s) Bassi D, Cappa F, Cocconcelli PS
Submission date Jun 08, 2012
Last update date Jun 13, 2012
Contact name Daniela Bassi
E-mail(s) daniela.bassi@unicatt.it
Phone +390372499108
Organization name Università Cattolica del Sacro Cuore
Department Istituto di Microbiologia
Lab CRB
Street address via Milano 24
City Cremona
State/province CR
ZIP/Postal code 26100
Country Italy
 
Samples (12) GSM946235, GSM946250, GSM946251, GSM946252, GSM946267, GSM946268 
Series (1)
GSE38619 Array-based transcriptional analysis of Clostridium sporogenes during germination, cell outgrowth and vegetative life

Data table header descriptions
ID Gene coordinates
SEQUENCE Probe Sequence
ORF
SPOT_ID

Data table
ID SEQUENCE ORF SPOT_ID
1000046-1000909_821_37 TGGCAATAATTGTAATAGGCACTTTGTTACTTTTGGT CBO0896
1001265-1001852_421_37 CGATCACATACGGATATTTCTCAAGCCTATGGAGATT CBO0897
1004066-1004836_730_40 GGTGAGGTGTGTATCATGGAAAGACTAACAAGAATTAAAT CBO0902
1005375-1006982_1510_40 GGGGACAAGGTAAATATAAGATATGTAGATACAAAGCAGG CBO0903
1009866-1010537_634_39 ACAATTAGAGGACTAGGTTATAAGGTGGTTAAACAGTGA CBO0905
1010534-1011565_977_40 AAATCTCAAGTCATGAAGCAGTAGGTACAGAATTTACTGT CBO0906
101129-101704_504_35 AGCTATAATAGTTACATCCACAGCAGCCTTTTGTG CBO0070
1011917-1012465_505_40 GGAAGGAAATTAAGTAAGGAAATGAAAAGAATCGGAACAC CBO0907
1012870-1014576_1502_40 GGTCTATGTATTATAATGGACAGGGAGTAACGGAAGATTA CBO0908
1014918-1015463_494_40 TGCTATCAGATGGTTCTTATACAAGTGGTTATGCAATGGC CBO0909
1015542-1017149_1567_40 AGCATTATAGGAATAGCAGTGGGAATAATAAAAGGGAAAT CBO0910
101717-102235_326_40 AGTTTGGTCCAGATAGTAATGTAGGGAAGATGGCATCCAT CBO0071
1017427-1017984_506_40 TGAGTGATGAAGTTTATTTAGTAACCTGTGGAATACCTTT CBO0911
1019876-1021357_1416_35 GCTTGCGGATATAGTAAGGCAAAGCTTAGATATGG CBO0914
1021359-1022321_796_40 CAATTGGGAGGAACGAATGTATATTTTGGCCAAGTGGTAG CBO0915
1022540-1023628_965_35 AGAAAGGATTTGCTCTAAGGGTTTGCAAGGATTTT CBO0916
1023902-1024621_365_40 TATTAGCCCATGGTGGAATAACAACTCTTGGAGCTAATAC CBO0917
1024625-1024924_186_40 AATAGAAAGTTTATTATTTGCATCACAAGCAGCATTAGGA CBO0917A
1024902-1025585_553_40 GAAGGATTAGACAGTAGAGGATATGTAGGATATATGCCTT CBO0918
1025994-1026656_585_40 GGGGTATGGTAATCTAATCTTATCAATGTTTTATGGAGGT CBO0919

Total number of rows: 3474

Table truncated, full table size 244 Kbytes.




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Supplementary data files not provided
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