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LOC8063743 transcription factor BIM2 [ Sorghum bicolor (sorghum) ]

Gene ID: 8063743, updated on 22-Oct-2023

Summary

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Gene symbol
LOC8063743
Gene description
transcription factor BIM2
Locus tag
SORBI_3002G236200
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorghum bicolor
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Genomic context

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See LOC8063743 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
13
Annotation release Status Assembly Chr Location
101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 2 NC_012871.2 (62703453..62711971)

Chromosome 2 - NC_012871.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC8083276 Neighboring gene phosphatidylinositol 4-kinase gamma 5 Neighboring gene pentatricopeptide repeat-containing protein At3g12770-like Neighboring gene uncharacterized protein At1g04910 Neighboring gene protease 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012871.2 Chromosome 2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor BIM2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Genomic

  1. NC_012871.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Range
    62703453..62711971
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021453184.1 → XP_021308859.1  transcription factor BIM2 isoform X3

    Conserved Domains (2) summary
    pfam00010
    Location:238 → 287
    HLH; Helix-loop-helix DNA-binding domain
    cl26386
    Location:62 → 157
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III

  2. XM_002460349.2 → XP_002460394.1  transcription factor BIM2 isoform X2

    See identical proteins and their annotated locations for XP_002460394.1

    UniProtKB/TrEMBL
    A0A1B6QD59
    Conserved Domains (1) summary
    pfam00010
    Location:238 → 287
    HLH; Helix-loop-helix DNA-binding domain

  3. XM_021453183.1 → XP_021308858.1  transcription factor BIM2 isoform X1

    UniProtKB/TrEMBL
    A0A1B6QD59
    Conserved Domains (2) summary
    pfam00010
    Location:238 → 287
    HLH; Helix-loop-helix DNA-binding domain
    cl26386
    Location:62 → 157
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III

  4. XM_021453185.1 → XP_021308860.1  transcription factor BIM2 isoform X4

    UniProtKB/TrEMBL
    A0A1B6QD41, A0A1B6QD59
    Conserved Domains (1) summary
    pfam00010
    Location:167 → 216
    HLH; Helix-loop-helix DNA-binding domain
Nucleotide Protein
Heading Accession and Version

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