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LOC18598752 transcription factor ORG2 [ Theobroma cacao (cacao) ]

Gene ID: 18598752, updated on 9-Nov-2023

Summary

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Gene symbol
LOC18598752
Gene description
transcription factor ORG2
Gene type
protein coding
RefSeq status
MODEL
Organism
Theobroma cacao
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Genomic context

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See LOC18598752 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Annotation release Status Assembly Chr Location
100 current Criollo_cocoa_genome_V2 (GCF_000208745.1) 5 NC_030854.1 (23725161..23727344)

Chromosome 5 - NC_030854.1Genomic Context describing neighboring genes Neighboring gene cytosolic sulfotransferase 15 Neighboring gene uncharacterized LOC108661965 Neighboring gene uncharacterized LOC108662132 Neighboring gene transcription factor ORG3-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_030854.1 Chromosome 5 Reference Criollo_cocoa_genome_V2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor ORG2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Theobroma cacao Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Criollo_cocoa_genome_V2 Primary Assembly

Genomic

  1. NC_030854.1 Reference Criollo_cocoa_genome_V2 Primary Assembly

    Range
    23725161..23727344
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007028415.2 → XP_007028477.1  transcription factor ORG2 isoform X2

    See identical proteins and their annotated locations for XP_007028477.1

    UniProtKB/TrEMBL
    A0A061F376
    Conserved Domains (1) summary
    pfam00010
    Location:63 → 114
    HLH; Helix-loop-helix DNA-binding domain

  2. XM_007028414.2 → XP_007028476.1  transcription factor ORG2 isoform X1

    See identical proteins and their annotated locations for XP_007028476.1

    UniProtKB/TrEMBL
    A0A061EWD9
    Conserved Domains (1) summary
    pfam00010
    Location:63 → 115
    HLH; Helix-loop-helix DNA-binding domain
Nucleotide Protein
Heading Accession and Version

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